Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 1.2e-233 812.8 404 100.0
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 5.5e-210 734.2 430 86.5
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 1.6e-193 679.5 430 79.3
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 7.8e-164 580.9 430 69.8
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.6e-145 520.0 437 61.8
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 6.2e-145 518.1 437 61.6
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 8.9e-144 514.2 437 60.9
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 9.9e-143 510.8 435 61.6
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 6.4e-142 508.1 436 62.2
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 1.4e-141 506.9 444 60.4
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 1.3e-139 500.4 428 62.4
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 6.6e-139 498.0 432 60.2
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 3.3e-138 495.7 439 59.5
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 3.3e-138 495.7 439 59.2
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.3e-138 495.4 446 59.0
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 9.5e-138 494.2 436 59.6
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 4.7e-137 491.9 436 58.7
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 8.1e-137 491.1 437 60.0
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 1.4e-136 490.3 434 58.3
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 4.0e-136 488.8 437 60.0
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 8.9e-136 487.6 437 59.7
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 1.2e-135 487.3 438 58.0
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 4.4e-135 485.3 437 59.5
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 4.4e-135 485.3 436 60.1
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 2.2e-134 483.0 434 59.2
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 3.8e-134 482.3 438 58.9
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 1.1e-133 480.7 436 58.9
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 2.4e-133 479.6 404 59.7
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 5.4e-133 478.4 435 58.6
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 1.2e-132 477.2 364 65.4
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 6.0e-132 474.9 431 56.6
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 7.8e-132 474.6 437 55.8
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.7e-131 473.4 437 58.1
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.7e-131 473.4 427 59.7
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.0e-131 472.6 437 56.5
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 8.6e-131 471.1 436 57.6
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 5.6e-130 468.4 434 56.0
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 1.2e-129 467.2 436 57.8
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 1.6e-129 466.8 427 58.5
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 4.7e-129 465.3 416 57.0
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.1e-128 464.2 437 56.5
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.1e-128 464.2 435 57.9
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 3.1e-128 462.6 438 55.9
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 6.9e-128 461.5 435 57.2
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 9.0e-128 461.1 448 55.8
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 9.0e-128 461.1 435 56.3
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 9.0e-128 461.1 388 61.3
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 2.6e-127 459.5 439 55.4
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 3.4e-127 459.1 445 56.2
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 9.9e-127 457.6 443 55.8
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 1.7e-126 456.8 440 54.8
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 2.9e-126 456.1 419 58.5
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 6.4e-126 454.9 436 56.4
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 1.4e-125 453.8 449 57.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 5.4e-125 451.8 428 55.4
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 1.6e-124 450.3 442 55.7
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 6.0e-124 448.4 428 54.9
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 6.0e-124 448.4 440 53.6
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 1.3e-123 447.2 428 55.4
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 2.3e-123 446.4 428 54.9
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 2.3e-123 446.4 431 55.5
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 3.0e-123 446.0 447 54.8
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 3.0e-123 446.0 419 55.8
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 8.7e-123 444.5 429 54.1
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 8.7e-123 444.5 428 54.4
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.1e-122 444.1 431 56.1
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.5e-122 443.7 364 61.0
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.9e-122 443.4 438 52.7
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.9e-122 443.4 399 58.9
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 9.6e-122 441.0 438 52.3
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.6e-121 439.1 427 56.2
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 7.6e-119 431.4 437 53.5
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 1.7e-118 430.3 383 61.1
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 2.9e-118 429.5 442 53.4
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 4.9e-118 428.7 394 56.3
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 2.4e-117 426.4 291 72.9
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 3.2e-117 426.0 466 50.9
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 5.4e-117 425.2 354 59.6
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 1.6e-116 423.7 462 51.3
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 7.9e-116 421.4 394 55.6
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 7.9e-116 421.4 424 53.1
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 5.1e-115 418.7 438 51.8
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 1.1e-114 417.5 432 51.6
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.5e-114 417.2 435 51.0
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.6e-113 413.7 421 54.2
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 8.1e-113 411.4 433 51.5
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 1.1e-112 411.0 528 45.6
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 2.4e-112 409.8 294 66.3
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 9.9e-111 404.4 444 50.7
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 3.8e-110 402.5 402 53.7
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 1.6e-108 397.1 437 50.1
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 4.8e-105 385.6 476 46.6
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 1.1e-101 374.4 349 55.0
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 3.2e-101 372.9 349 57.0
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 1.8e-96 357.1 424 46.2
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 5.0e-94 349.0 254 65.4
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 8.5e-86 321.6 302 52.3
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 9.1e-80 301.6 366 43.4
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 3.6e-76 289.7 315 48.3
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.9e-69 267.3 333 44.1
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.9e-69 267.3 334 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 2.5e-69 266.9 412 38.1
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 4.7e-68 262.7 282 52.1
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 6.5e-62 242.3 421 38.0
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 9.1e-56 221.9 399 33.3
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 2.0e-55 220.7 232 55.2
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 4.9e-49 199.5 183 55.7
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 1.2e-44 184.9 340 32.6
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 3.2e-32 143.7 122 59.8
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 8.9e-27 125.6 119 52.9
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 1.1e-21 108.6 132 47.0
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 3.9e-14 83.6 76 56.6
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 1.7e-06 58.2 53 50.9


User provided reference genes

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