Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.0e-160 570.1 300 100.0
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.1e-111 407.1 246 89.8
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.3e-87 325.9 305 66.2
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 2.2e-70 270.0 248 64.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.2e-29 133.3 211 40.3
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.7e-27 127.5 232 38.4
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 6.6e-27 125.6 249 37.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-26 124.8 312 33.3
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.6e-26 121.7 160 50.0
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.2e-25 121.3 196 43.9
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.9e-22 110.2 196 40.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.1e-21 108.2 180 43.9
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.4e-21 107.1 166 45.2
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.2e-21 106.7 200 41.0
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.1e-21 105.5 147 44.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.2e-20 104.8 150 46.0
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 3.5e-20 103.2 150 42.7
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.6e-20 102.8 172 41.3
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.0e-20 102.4 147 43.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.0e-19 101.7 148 41.9
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.7e-19 100.9 238 38.2
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.6e-19 99.0 150 44.0
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.6e-18 95.1 193 36.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.3e-17 94.7 221 34.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 6.2e-17 92.4 187 36.4
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 8.1e-17 92.0 145 41.4
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-16 91.3 169 37.9
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.4e-16 90.5 216 32.9
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.0e-16 89.7 242 32.2
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.5e-15 87.8 152 38.8
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 7.6e-15 85.5 132 42.4
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-14 84.3 201 34.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-14 84.0 201 34.8
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.9e-14 83.6 214 35.5
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 3.8e-14 83.2 138 40.6
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 4.9e-14 82.8 148 39.2
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 4.9e-14 82.8 137 38.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 6.4e-14 82.4 215 32.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 8.4e-14 82.0 156 38.5
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 8.4e-14 82.0 202 33.2
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.4e-13 81.3 139 39.6
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.4e-13 81.3 134 39.6
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-13 80.9 155 37.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.4e-13 80.5 226 31.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.2e-13 79.7 190 33.7
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.2e-13 79.7 190 33.7
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 4.2e-13 79.7 146 35.6
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 9.3e-13 78.6 150 38.0
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 9.3e-13 78.6 150 38.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.3e-13 78.6 248 31.0
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.7e-12 77.0 173 37.0
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 4.6e-12 76.3 161 36.6
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 4.6e-12 76.3 142 36.6
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.6e-12 76.3 144 39.6
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.6e-12 76.3 150 40.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 4.6e-12 76.3 216 31.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 4.6e-12 76.3 146 33.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.3e-11 73.9 203 31.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.5e-10 71.2 229 27.1
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 2.5e-10 70.5 158 35.4
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 3.3e-10 70.1 71 56.3
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 4.3e-10 69.7 158 35.4
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 4.3e-10 69.7 158 35.4
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 4.3e-10 69.7 50 68.0
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 5.6e-10 69.3 150 34.7
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 7.4e-10 68.9 152 32.9
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 7.4e-10 68.9 148 38.5
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 7.4e-10 68.9 152 32.9
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 7.4e-10 68.9 148 38.5
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.4e-10 68.9 41 82.9
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 7.4e-10 68.9 183 32.8
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.1e-09 67.4 79 51.9
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.1e-09 67.4 55 63.6
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 2.8e-09 67.0 132 36.4
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.8e-09 66.2 50 66.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 8.1e-09 65.5 143 37.8
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 8.1e-09 65.5 45 68.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 8.1e-09 65.5 147 34.7
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.1e-09 65.5 55 61.8
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-08 65.1 148 35.1
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.4e-08 64.7 46 65.2
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 3.1e-08 63.5 44 65.9
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-08 63.5 44 65.9
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.1e-08 63.5 102 43.1
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.1e-08 63.5 144 32.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.0e-08 63.2 74 43.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 5.3e-08 62.8 84 47.6
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-08 62.4 44 63.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 6.9e-08 62.4 55 61.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.9e-08 62.4 144 31.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 9.0e-08 62.0 236 28.8
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-07 61.6 56 58.9
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.5e-07 61.2 80 46.2
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.5e-07 61.2 50 64.0
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.5e-07 61.2 47 61.7
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 2.6e-07 60.5 102 42.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.5e-07 59.7 53 52.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 7.6e-07 58.9 237 28.3
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.9e-06 57.0 75 44.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.8e-06 56.6 91 38.5
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.8e-06 56.6 46 58.7
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 6.4e-06 55.8 39 66.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 8.4e-06 55.5 42 57.1
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 8.4e-06 55.5 47 61.7


User provided reference genes

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