Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 1.2e-114 416.4 199 100.0
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 6.8e-105 384.0 197 91.4
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 5.1e-92 341.3 197 81.2
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 6.3e-74 281.2 199 64.3
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 2.4e-73 279.3 195 67.2
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 7.6e-72 274.2 197 64.0
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 1.3e-71 273.5 199 63.3
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 2.9e-71 272.3 197 64.0
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 2.9e-71 272.3 199 64.3
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.5e-71 271.2 197 62.9
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 6.5e-71 271.2 196 63.3
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 8.5e-71 270.8 197 62.9
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 8.5e-71 270.8 199 61.8
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 8.5e-71 270.8 197 62.9
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 8.5e-71 270.8 197 65.0
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.1e-70 270.4 271 57.2
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 3.2e-70 268.9 201 63.7
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 9.3e-70 267.3 197 61.9
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.1e-69 266.2 197 63.5
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 3.6e-69 265.4 200 62.5
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 3.6e-69 265.4 200 62.5
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 3.6e-69 265.4 200 62.5
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 4.6e-69 265.0 197 59.4
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 6.1e-69 264.6 199 61.3
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 1.0e-68 263.8 199 61.3
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 1.0e-68 263.8 199 61.8
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.8e-68 263.1 197 60.9
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.8e-68 263.1 197 60.9
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 2.3e-68 262.7 193 62.2
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 3.9e-68 261.9 197 60.9
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 8.7e-68 260.8 199 60.8
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.1e-67 260.4 197 60.4
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.1e-67 260.4 194 62.9
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.5e-67 260.0 191 63.9
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.5e-67 260.0 191 63.9
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.5e-67 260.0 195 63.1
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.5e-67 260.0 200 62.0
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.5e-67 260.0 199 60.3
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.9e-67 259.6 199 60.3
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 2.5e-67 259.2 199 60.3
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.5e-67 259.2 215 58.1
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.5e-67 259.2 200 60.5
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 4.3e-67 258.5 197 60.4
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 4.3e-67 258.5 199 60.3
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 9.7e-67 257.3 194 62.4
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 1.3e-66 256.9 199 59.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 1.6e-66 256.5 196 60.2
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 4.8e-66 255.0 200 58.5
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 4.8e-66 255.0 199 60.3
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 8.2e-66 254.2 199 59.3
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 8.2e-66 254.2 199 58.8
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 8.2e-66 254.2 199 59.8
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 8.2e-66 254.2 199 59.8
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.4e-65 253.4 193 61.1
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 1.8e-65 253.1 196 59.7
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 4.1e-65 251.9 195 60.0
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.2e-64 250.4 197 56.3
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 1.2e-64 250.4 200 59.5
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 1.2e-64 250.4 179 65.9
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 1.5e-64 250.0 197 58.9
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 2.0e-64 249.6 192 58.9
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 4.5e-64 248.4 177 66.1
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 1.0e-63 247.3 197 58.4
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 1.7e-63 246.5 177 65.0
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 1.7e-63 246.5 199 58.3
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 2.9e-63 245.7 192 59.4
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 5.0e-63 245.0 200 57.0
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 5.0e-63 245.0 199 57.8
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 6.5e-63 244.6 199 57.8
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 2.5e-62 242.7 199 57.3
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 3.2e-62 242.3 199 58.8
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 7.2e-62 241.1 201 57.7
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 6.1e-61 238.0 169 64.5
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 7.9e-61 237.7 199 57.8
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 1.0e-60 237.3 194 54.6
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.8e-60 236.5 197 54.3
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 2.3e-60 236.1 166 65.7
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.0e-60 235.7 193 57.0
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 8.8e-60 234.2 166 63.9
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 1.5e-59 233.4 198 55.6
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 5.7e-59 231.5 161 66.5
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 7.4e-59 231.1 197 57.4
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 2.8e-58 229.2 199 56.3
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 2.8e-58 229.2 203 53.7
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 6.3e-58 228.0 197 52.8
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 2.0e-56 223.0 199 48.7
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 3.4e-56 222.2 165 61.8
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 5.9e-56 221.5 169 58.0
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.4e-54 216.9 167 59.9
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 2.1e-53 213.0 156 62.2
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 3.6e-53 212.2 166 59.6
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 2.3e-52 209.5 221 47.5
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 9.7e-51 204.1 194 51.0
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 1.7e-50 203.4 199 53.3
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 2.8e-50 202.6 199 47.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.0e-49 198.0 195 44.1
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.2e-48 197.2 166 57.2
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 8.5e-47 191.0 199 47.7
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.2e-45 187.2 196 40.8
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.7e-43 178.3 133 60.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 5.7e-43 178.3 133 60.2
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.4e-41 173.7 196 47.4
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 2.0e-40 169.9 132 56.1
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.7e-39 166.8 197 45.2
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 4.7e-37 158.7 173 47.4
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 8.8e-36 154.5 223 36.8
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 1.5e-35 153.7 107 61.7
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.6e-27 126.3 82 65.9
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.4e-27 125.6 92 62.0
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 5.7e-27 125.2 179 38.5
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 6.6e-23 111.7 91 57.1
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 3.3e-22 109.4 111 46.8
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 4.3e-22 109.0 77 63.6
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 1.2e-21 107.5 232 34.5
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 1.7e-18 97.1 135 41.5
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.2e-16 90.9 68 63.2
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 8.9e-12 74.7 68 52.9
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 5.8e-11 72.0 47 70.2
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 3.2e-09 66.2 61 50.8
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 7.0e-09 65.1 57 52.6
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 1.6e-08 63.9 53 58.5


User provided reference genes

Program Settings