Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005999.2 Cucumis melo HOM05D006631 ORTHO05D008359 1.1e-170 603.2 298 100.0
CsaV3_3G007830 Cucumis sativus L. HOM05D006631 ORTHO05D008359 2.7e-145 518.8 298 88.6
ClCG05G000610 Citrullus lanatus HOM05D006631 ORTHO05D008359 2.0e-137 492.7 298 84.2
Sed0011774 Sechium edule HOM05D006631 ORTHO05D008359 2.4e-109 399.4 298 72.1
Gohir.D11G103700 Gossypium hirsutum HOM05D006631 ORTHO05D008359 5.3e-109 398.3 301 68.8
Gorai.007G111000 Gossypium raimondii HOM05D006631 ORTHO05D008359 5.3e-109 398.3 301 68.8
Manes.05G019200 Manihot esculenta HOM05D006631 ORTHO05D008359 2.0e-108 396.4 302 69.9
Thecc.01G337000 Theobroma cacao HOM05D006631 ORTHO05D008359 2.0e-108 396.4 301 68.8
TWI59G0463 Tripterygium wilfordii HOM05D006631 ORTHO05D008359 2.6e-108 396.0 302 69.5
Gohir.A11G099200 Gossypium hirsutum HOM05D006631 ORTHO05D008359 4.4e-108 395.2 301 68.4
RcHm_v2.0_Chr1g0360621 Rosa chinensis HOM05D006631 ORTHO05D008359 1.1e-106 390.6 305 67.9
FvH4_7g17240 Fragaria vesca HOM05D006631 ORTHO05D008359 7.1e-106 387.9 304 67.8
QL08p046273 Quercus lobata HOM05D006631 ORTHO05D008359 7.1e-106 387.9 302 68.9
Atru.chr5.731 Acer truncatum HOM05D006631 ORTHO05D008359 1.2e-105 387.1 303 69.0
Dinv34238 Davidia involucrata HOM05D006631 ORTHO05D008359 1.2e-105 387.1 306 69.0
COL.COLO4_06257 Corchorus olitorius HOM05D006631 ORTHO05D008359 1.6e-105 386.7 289 72.0
Duzib138G0935 Durio zibethinus HOM05D006631 ORTHO05D008359 1.6e-105 386.7 301 67.1
Cpa.g.sc144.12 Carica papaya HOM05D006631 ORTHO05D008359 2.1e-105 386.3 301 67.1
Actinidia28101 Actinidia chinensis HOM05D006631 ORTHO05D008359 2.7e-105 386.0 302 68.9
Solyc01g096240.4 Solanum lycopersicum HOM05D006631 ORTHO05D008359 6.0e-105 384.8 306 69.0
GSVIVG01027398001 Vitis vinifera HOM05D006631 ORTHO05D008359 6.0e-105 384.8 303 69.3
CiPaw.01G079400 Carya illinoinensis HOM05D006631 ORTHO05D008359 7.9e-105 384.4 301 68.4
Lalb_Chr19g0133561 Lupinus albus HOM05D006631 ORTHO05D008359 1.3e-104 383.6 303 67.0
CANSAT56G2365 Cannabis sativa HOM05D006631 ORTHO05D008359 2.3e-104 382.9 305 65.2
FAN06G3756 Fragaria x ananassa HOM05D006631 ORTHO05D008359 2.3e-104 382.9 306 67.3
Phvul.006G115700 Phaseolus vulgaris HOM05D006631 ORTHO05D008359 2.3e-104 382.9 300 67.7
Sopen01g040000 Solanum pennellii HOM05D006631 ORTHO05D008359 2.3e-104 382.9 306 68.3
FAN06G3280 Fragaria x ananassa HOM05D006631 ORTHO05D008359 6.6e-104 381.3 311 66.6
Glyma.19G258300 Glycine max HOM05D006631 ORTHO05D008359 8.7e-104 380.9 300 67.0
MD01G1086200 Malus domestica HOM05D006631 ORTHO05D008359 1.1e-103 380.6 302 66.9
PGSC0003DMG400000125 Solanum tuberosum HOM05D006631 ORTHO05D008359 1.1e-103 380.6 306 68.3
Potri.014G102400 Populus trichocarpa HOM05D006631 ORTHO05D008359 1.5e-103 380.2 304 66.1
Glyma.03G259400 Glycine max HOM05D006631 ORTHO05D008359 1.9e-103 379.8 299 67.6
Lj1g0014889 Lotus japonicus HOM05D006631 ORTHO05D008359 2.5e-103 379.4 303 67.7
Nn1g00373 Nelumbo nucifera HOM05D006631 ORTHO05D008359 2.5e-103 379.4 305 67.2
PSO782G2421 Papaver somniferum HOM05D006631 ORTHO05D008359 7.4e-103 377.9 310 64.5
Cfa003762 Carpinus fangiana HOM05D006631 ORTHO05D008359 9.6e-103 377.5 302 66.2
PSO063G1328 Papaver somniferum HOM05D006631 ORTHO05D008359 1.3e-102 377.1 312 64.1
Psat3g001400 Pisum sativum HOM05D006631 ORTHO05D008359 1.3e-102 377.1 304 66.8
Ca_09530_v3 Cicer arietinum L. HOM05D006631 ORTHO05D008359 1.6e-102 376.7 303 67.3
TAR375G0108 Trochodendron aralioides HOM05D006631 ORTHO05D008359 6.2e-102 374.8 304 65.8
PGR031G0416 Punica granatum HOM05D006631 ORTHO05D008359 8.1e-102 374.4 299 66.2
Prupe.2G193800 Prunus persica HOM05D006631 ORTHO05D008359 1.1e-101 374.0 294 66.0
CSS0022670 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 6.9e-101 371.3 300 65.7
SalBow5G1997 Salvia bowleyana HOM05D006631 ORTHO05D008359 1.5e-100 370.2 304 65.5
THA.LOC104817387 Tarenaya hassleriana HOM05D006631 ORTHO05D008359 1.5e-100 370.2 307 64.5
arahy.Tifrunner.gnm1.ann1.588I57 Arachis hypogaea HOM05D006631 ORTHO05D008359 2.9e-99 365.9 303 65.0
arahy.Tifrunner.gnm1.ann1.NC261Q Arachis hypogaea HOM05D006631 ORTHO05D008359 3.8e-99 365.5 303 65.7
Ciclev10021628m.g Citrus clementina HOM05D006631 ORTHO05D008359 3.8e-99 365.5 308 64.6
Eucgr.D02642 Eucalyptus grandis HOM05D006631 ORTHO05D008359 6.4e-99 364.8 305 65.2
ECA240G4795 Erigeron canadensis HOM05D006631 ORTHO05D008359 8.4e-99 364.4 302 65.6
AUR62022720 Chenopodium quinoa HOM05D006631 ORTHO05D008359 1.4e-98 363.6 308 64.9
Nitab4.5_0002527g0020 Nicotiana tabacum HOM05D006631 ORTHO05D008359 1.9e-98 363.2 309 65.7
MSTRG.4800 Avicennia marina HOM05D006631 ORTHO05D008359 5.5e-98 361.7 308 63.3
Hund16731 Selenicereus undatus HOM05D006631 ORTHO05D008359 7.1e-98 361.3 296 64.2
Phvul.010G116700 Phaseolus vulgaris HOM05D006631 ORTHO05D008359 2.1e-97 359.8 298 63.8
Rhsim01G0176500 Rhododendron simsii HOM05D006631 ORTHO05D008359 2.7e-97 359.4 259 71.8
Sabra14G0075400 Salix brachista HOM05D006631 ORTHO05D008359 4.6e-97 358.6 230 77.8
TPR.G4790 Trifolium pratense HOM05D006631 ORTHO05D008359 1.8e-96 356.7 309 63.4
AUR62004534 Chenopodium quinoa HOM05D006631 ORTHO05D008359 3.9e-96 355.5 306 64.1
Medtr7g117970 Medicago truncatula HOM05D006631 ORTHO05D008359 5.1e-96 355.1 306 63.7
AL5G44450 Arabidopsis lyrata HOM05D006631 ORTHO05D008359 1.9e-95 353.2 295 63.7
FAN03G0022 Fragaria x ananassa HOM05D006631 ORTHO05D008359 1.9e-95 353.2 297 64.0
FAN01G0947 Fragaria x ananassa HOM05D006631 ORTHO05D008359 4.3e-95 352.1 230 75.7
FAN10G3243 Fragaria x ananassa HOM05D006631 ORTHO05D008359 4.3e-95 352.1 230 75.7
MSTRG.28278 Avicennia marina HOM05D006631 ORTHO05D008359 7.4e-95 351.3 301 64.8
Migut.N01525 Erythranthe guttata HOM05D006631 ORTHO05D008359 1.3e-94 350.5 298 61.7
Peaxi162Scf00767g00111 Petunia axillaris HOM05D006631 ORTHO05D008359 2.1e-94 349.7 231 77.1
Lj9A602T26 Lonicera japonica HOM05D006631 ORTHO05D008359 2.8e-94 349.4 331 61.0
Nitab4.5_0000307g0140 Nicotiana tabacum HOM05D006631 ORTHO05D008359 2.8e-94 349.4 297 65.7
Aa31LG10G15890 Aethionema arabicum HOM05D006631 ORTHO05D008359 3.7e-94 349.0 290 64.1
AT3G61870 Arabidopsis thaliana HOM05D006631 ORTHO05D008359 1.8e-93 346.7 295 62.0
C08p36710 Brassica napus HOM05D006631 ORTHO05D008359 4.0e-93 345.5 295 62.4
BolC8t51253H Brassica oleracea HOM05D006631 ORTHO05D008359 4.0e-93 345.5 295 62.4
A09p53900 Brassica napus HOM05D006631 ORTHO05D008359 6.9e-93 344.7 252 69.0
BraA09t40806Z Brassica rapa HOM05D006631 ORTHO05D008359 6.9e-93 344.7 252 69.0
Haze_15698 Corylus avellana HOM05D006631 ORTHO05D008359 1.2e-92 344.0 230 75.2
CARHR172210 Cardamine hirsuta HOM05D006631 ORTHO05D008359 2.0e-92 343.2 288 63.9
Thhalv10006166m.g Eutrema salsugineum HOM05D006631 ORTHO05D008359 2.0e-92 343.2 298 62.4
Sp5g01490 Schrenkiella parvula HOM05D006631 ORTHO05D008359 2.6e-92 342.8 288 61.8
Ah.05g179220 Amaranthus hybridus HOM05D006631 ORTHO05D008359 4.5e-92 342.0 305 60.3
CAN.G1415.2 Capsicum annuum HOM05D006631 ORTHO05D008359 5.8e-92 341.7 231 75.3
Carub.0005s2861 Capsella rubella HOM05D006631 ORTHO05D008359 1.0e-91 340.9 296 60.8
VMungo0540G1103 Vigna mungo HOM05D006631 ORTHO05D008359 4.9e-91 338.6 233 73.8
vmacro12589 Vaccinium macrocarpon HOM05D006631 ORTHO05D008359 6.5e-91 338.2 237 74.3
Glyma.16G021600 Glycine max HOM05D006631 ORTHO05D008359 8.4e-91 337.8 305 62.0
MBI04_g33414_MAGBIO Magnolia biondii HOM05D006631 ORTHO05D008359 2.5e-90 336.3 305 62.3
Lalb_Chr17g0342841 Lupinus albus HOM05D006631 ORTHO05D008359 1.2e-89 334.0 288 61.8
Lsat_1_v5_gn_3_141021 Lactuca sativa HOM05D006631 ORTHO05D008359 1.8e-88 330.1 296 60.8
SEGI_25065 Sequoiadendron giganteum HOM05D006631 ORTHO05D008359 3.0e-88 329.3 237 71.7
CDE07G1250 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 6.7e-88 328.2 250 67.6
HanXRQChr03g0094051 Helianthus annuus HOM05D006631 ORTHO05D008359 1.1e-87 327.4 305 60.7
Sc23g0001960 Simmondsia chinensis HOM05D006631 ORTHO05D008359 1.1e-87 327.4 231 71.9
VMungo0331G0918 Vigna mungo HOM05D006631 ORTHO05D008359 9.6e-87 324.3 297 60.9
HPP92_002500 Vanilla planifolia HOM05D006631 ORTHO05D008359 1.4e-85 320.5 296 60.8
Os02g0122500 Oryza sativa ssp. japonica HOM05D006631 ORTHO05D008359 7.6e-84 314.7 247 66.4
Oeu007870.1 Olea europaea HOM05D006631 ORTHO05D008359 1.6e-81 307.0 207 77.3
ATR0620G070 Amborella trichopoda HOM05D006631 ORTHO05D008359 1.3e-80 303.9 278 57.9
SMO143G0155 Selaginella moellendorffii HOM05D006631 ORTHO05D008359 4.3e-79 298.9 228 66.2
Mapoly0049s0137 Marchantia polymorpha HOM05D006631 ORTHO05D008359 2.8e-78 296.2 237 65.0
BcaC07g42601 Brassica carinata HOM05D006631 ORTHO05D008359 7.7e-76 288.1 295 55.3
Pp3c5_3210 Physcomitrium patens HOM05D006631 ORTHO05D008359 4.6e-73 278.9 241 62.7
FAN10G2512 Fragaria x ananassa HOM05D006631 ORTHO05D008359 6.7e-72 275.0 306 55.6
CBR_g37545 Chara braunii HOM05D006631 ORTHO05D008359 9.1e-69 264.6 227 60.8
EL10Ac1g00220 Beta vulgaris HOM05D006631 ORTHO05D008359 4.2e-66 255.8 244 58.6
arahy.Tifrunner.gnm1.ann1.S1C8P4 Arachis hypogaea HOM05D006631 ORTHO05D008359 2.3e-64 250.0 313 51.8
MD07G1155100 Malus domestica HOM05D006631 ORTHO05D008359 8.8e-64 248.1 184 68.5
MCO07G366 Micromonas commoda HOM05D006631 ORTHO05D008359 4.4e-63 245.7 245 52.2
DCAR_008654 Daucus carota HOM05D006631 ORTHO05D008359 4.8e-62 242.3 252 55.6
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 1.1e-61 241.1 186 67.2
arahy.Tifrunner.gnm1.ann1.GG2XE6 Arachis hypogaea HOM05D006631 ORTHO05D008359 6.5e-59 231.9 272 52.9
Cc02_g39740 Coffea canephora HOM05D006631 ORTHO05D008359 8.5e-59 231.5 231 54.5
Cre12.g519300 Chlamydomonas reinhardtii HOM05D006631 ORTHO05D008359 9.4e-58 228.0 241 53.1
CDE09G1080 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 1.3e-54 217.6 282 44.3
CSS0025910 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 7.0e-53 211.8 114 87.7
PRCOL_00004956 Prasinoderma coloniale HOM05D006631 ORTHO05D008359 7.0e-53 211.8 222 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2495 Anthoceros agrestis HOM05D006631 ORTHO05D008359 7.0e-45 185.3 109 81.7
unitig_8.g3405 Utricularia gibba HOM05D006631 ORTHO05D008359 7.0e-45 185.3 205 55.6
TAR374G1086 Trochodendron aralioides HOM05D000482 ORTHO05D000349 3.1e-37 159.8 271 38.4
TAR374G0170 Trochodendron aralioides HOM05D000482 ORTHO05D000349 1.2e-25 121.3 126 50.8
TAR374G1450 Trochodendron aralioides HOM05D000482 ORTHO05D000349 6.8e-24 115.5 114 54.4
unitig_22.g6820 Utricularia gibba HOM05D006631 ORTHO05D008359 1.2e-09 68.2 63 60.3
GSVIVG01001070001 Vitis vinifera HOM05D006631 ORTHO05D008359 1.1e-08 65.1 34 85.3


User provided reference genes

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