Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 4.5e-77 291.2 149 100.0
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 7.3e-35 151.0 96 81.2
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.4e-30 134.8 74 91.9
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 1.3e-18 97.1 61 85.2
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.1e-17 94.0 77 61.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 3.1e-17 92.4 72 62.5
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.1e-17 92.4 77 61.0
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 3.1e-17 92.4 77 61.0
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 6.9e-17 91.3 74 62.2
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 6.9e-17 91.3 92 54.3
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 9.0e-17 90.9 77 57.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 3.4e-16 89.0 78 59.0
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 7.6e-16 87.8 72 59.7
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 7.6e-16 87.8 91 52.7
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 7.6e-16 87.8 61 68.9
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.3e-15 87.0 78 53.8
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 2.2e-15 86.3 66 62.1
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.2e-15 86.3 74 62.2
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 2.2e-15 86.3 74 60.8
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-15 85.9 65 63.1
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-15 85.9 65 63.1
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.8e-15 85.5 79 59.5
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.8e-15 85.5 81 55.6
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 3.8e-15 85.5 77 54.5
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 4.9e-15 85.1 65 64.6
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 6.4e-15 84.7 64 59.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 6.4e-15 84.7 109 48.6
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 6.4e-15 84.7 99 50.5
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 8.4e-15 84.3 69 65.2
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.1e-14 84.0 64 59.4
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.1e-14 84.0 78 55.1
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.4e-14 83.6 81 55.6
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.9e-14 83.2 73 63.0
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 1.9e-14 83.2 73 61.6
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.4e-14 82.8 62 59.7
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 3.2e-14 82.4 64 62.5
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 5.4e-14 81.6 60 66.7
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 7.1e-14 81.3 79 49.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 7.1e-14 81.3 73 63.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.6e-13 80.1 73 57.5
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.6e-13 80.1 72 58.3
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 2.1e-13 79.7 102 44.1
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 2.7e-13 79.3 72 55.6
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.7e-13 79.3 79 55.7
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 3.5e-13 79.0 77 50.6
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 4.6e-13 78.6 81 56.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 6.0e-13 78.2 78 53.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 7.9e-13 77.8 71 53.5
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 7.9e-13 77.8 71 60.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 7.9e-13 77.8 75 60.0
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.0e-12 77.4 72 52.8
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 1.0e-12 77.4 79 49.4
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.0e-12 77.4 98 41.8
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.3e-12 77.0 72 58.3
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.3e-12 77.0 72 58.3
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 1.8e-12 76.6 62 56.5
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 3.0e-12 75.9 82 47.6
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 5.1e-12 75.1 66 59.1
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 6.7e-12 74.7 79 48.1
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 8.7e-12 74.3 81 48.1
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 8.7e-12 74.3 77 51.9
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 3.3e-11 72.4 88 48.9
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 3.3e-11 72.4 74 52.7
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.3e-11 72.0 79 50.6
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.6e-11 71.6 77 48.1
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.6e-11 71.6 77 48.1
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 7.4e-11 71.2 74 52.7
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.6e-10 70.1 77 50.6
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 3.7e-10 68.9 78 52.6
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 3.7e-10 68.9 70 48.6
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 4.8e-10 68.6 74 51.4
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 4.8e-10 68.6 78 52.6
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 8.1e-10 67.8 76 50.0
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.1e-09 67.4 55 63.6
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.1e-09 67.4 76 55.3
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.4e-09 67.0 68 47.1
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.8e-09 66.6 55 63.6
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 2.4e-09 66.2 78 53.8
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 5.3e-09 65.1 77 46.8
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.2e-08 63.9 72 51.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.5e-08 63.5 49 65.3
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.0e-08 63.2 76 52.6
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.5e-08 62.0 57 52.6
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 7.6e-08 61.2 53 66.0
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 9.9e-08 60.8 51 62.7
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-07 60.5 79 44.3
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-07 60.5 88 43.2
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-07 60.5 79 44.3
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-07 60.5 79 44.3
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.7e-07 60.1 75 49.3
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.7e-07 60.1 74 48.6
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 2.2e-07 59.7 72 50.0
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.8e-07 58.9 61 52.5
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 4.9e-07 58.5 57 54.4
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 6.4e-07 58.2 55 54.5
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 6.4e-07 58.2 79 43.0
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.4e-07 58.2 79 43.0
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.4e-07 58.2 85 40.0
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 1.9e-06 56.6 64 51.6
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 2.4e-06 56.2 74 48.6
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 3.2e-06 55.8 60 50.0
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.2e-06 55.5 66 50.0
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 4.2e-06 55.5 55 52.7


User provided reference genes

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