Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.8e-205 719.2 408 100.0
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 7.0e-189 664.1 408 92.9
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 7.5e-175 617.5 420 86.4
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 6.4e-158 561.2 409 75.6
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 9.7e-122 441.0 335 69.6
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 9.7e-122 441.0 330 70.9
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 6.3e-121 438.3 403 68.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.1e-120 435.6 409 65.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 5.3e-120 435.3 329 70.5
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.9e-120 434.9 401 64.6
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 9.1e-120 434.5 332 69.0
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.5e-119 432.2 330 69.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 6.5e-118 428.3 326 69.6
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.1e-117 427.6 326 69.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.4e-117 427.2 325 68.6
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.4e-117 427.2 328 69.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 3.2e-117 426.0 335 69.9
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 9.4e-117 424.5 327 68.8
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.6e-116 423.7 338 67.2
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.1e-116 423.3 328 68.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.1e-116 423.3 325 70.5
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.0e-115 421.0 331 67.4
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.0e-115 421.0 329 69.9
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 3.0e-115 419.5 333 66.4
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 5.1e-115 418.7 406 60.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 6.7e-115 418.3 331 66.8
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 4.4e-114 415.6 318 68.2
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 4.4e-114 415.6 406 57.4
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.8e-113 412.1 323 66.6
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 6.3e-113 411.8 335 64.8
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.4e-112 410.6 412 60.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.4e-112 410.6 325 66.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.8e-112 410.2 333 65.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 2.4e-112 409.8 332 66.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.1e-112 409.5 327 65.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.1e-112 409.1 315 67.6
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 9.1e-112 407.9 335 63.9
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 9.1e-112 407.9 406 65.8
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 9.1e-112 407.9 407 57.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.0e-111 406.8 328 66.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 2.6e-111 406.4 326 64.1
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 3.5e-111 406.0 356 61.5
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.0e-110 404.4 405 59.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 2.2e-110 403.3 326 66.3
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.2e-110 403.3 427 60.2
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.9e-110 402.9 324 67.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 6.5e-110 401.7 331 64.7
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.4e-109 400.6 411 59.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.5e-109 399.8 353 62.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 2.5e-109 399.8 318 64.8
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 3.2e-109 399.4 324 65.4
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 3.2e-109 399.4 406 64.3
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 4.2e-109 399.1 354 61.0
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 5.5e-109 398.7 323 64.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 5.5e-109 398.7 326 63.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.5e-109 398.7 406 63.5
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.2e-108 397.5 323 65.9
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 3.6e-108 396.0 329 63.2
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 4.7e-108 395.6 325 65.2
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.7e-108 395.6 406 63.5
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 6.1e-108 395.2 320 64.4
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 8.0e-108 394.8 332 63.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.0e-107 394.4 322 64.0
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.0e-107 394.4 404 57.9
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.4e-107 394.0 312 65.4
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.8e-107 393.7 335 63.3
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.8e-107 393.7 318 66.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 5.2e-107 392.1 321 65.1
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 6.7e-107 391.7 430 57.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.5e-106 390.6 406 59.1
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 3.3e-106 389.4 330 62.7
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 7.4e-106 388.3 322 63.4
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 7.4e-106 388.3 322 63.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 2.2e-105 386.7 327 62.1
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.1e-104 384.4 329 62.0
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.3e-104 382.1 326 64.7
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 5.3e-104 382.1 320 62.5
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.0e-103 380.2 327 64.2
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 2.0e-103 380.2 327 64.5
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.5e-103 379.4 411 58.9
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.5e-103 379.4 324 63.0
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.3e-102 377.5 409 55.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.7e-102 377.1 409 58.4
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.9e-102 376.3 361 57.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 5.0e-102 375.6 374 55.9
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.5e-101 374.0 407 56.5
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.9e-101 373.6 335 60.0
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 2.5e-101 373.2 291 68.4
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.1e-100 370.2 307 63.8
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 8.0e-100 368.2 326 60.1
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 3.0e-99 366.3 335 58.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 6.8e-99 365.2 316 61.7
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 1.5e-98 364.0 285 67.4
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 4.4e-98 362.5 347 55.6
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 7.5e-98 361.7 343 57.7
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.8e-96 357.1 292 65.1
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.1e-96 355.9 304 62.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 7.7e-95 351.7 324 58.6
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.3e-94 350.9 345 57.1
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.0e-94 349.0 513 50.7
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.1e-93 347.8 296 63.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 2.1e-92 343.6 371 55.3
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 4.0e-91 339.3 308 58.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 4.0e-91 339.3 296 60.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 5.2e-91 339.0 435 49.9
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 3.4e-90 336.3 299 59.2
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 2.4e-88 330.1 417 52.8
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 4.7e-84 315.8 335 52.2
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.7e-81 306.2 301 56.5
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.5e-79 299.7 296 59.8
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 6.6e-78 295.4 305 55.7
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.5e-71 273.1 227 65.2
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 8.3e-65 251.9 221 59.7
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 5.4e-64 249.2 215 62.8
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 2.3e-62 243.8 414 38.6
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 3.0e-54 216.9 323 39.9
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 4.7e-52 209.5 314 42.4
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 8.4e-49 198.7 238 57.6
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.4e-43 180.6 136 68.4
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.3e-43 179.5 227 60.4
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.7e-38 164.5 172 56.4
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 1.7e-38 164.5 161 56.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 2.3e-38 164.1 330 35.8
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.3e-37 160.2 387 31.8
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 4.3e-37 159.8 157 58.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.1e-35 155.2 117 69.2
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 5.3e-35 152.9 113 74.3
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 3.4e-34 150.2 362 30.9
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 5.1e-30 136.3 197 48.2
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.2e-24 117.1 97 64.9
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-23 115.2 166 43.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 4.6e-23 113.2 94 63.8
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 5.1e-22 109.8 335 29.6
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 7.4e-21 105.9 68 82.4
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.8e-20 104.0 81 67.9
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-19 101.7 178 38.8
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.8e-19 101.3 135 51.1
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.4e-19 100.9 63 85.7
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 3.1e-19 100.5 164 39.6
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.2e-17 94.4 110 54.5
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 3.8e-17 93.6 135 47.4
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 6.5e-17 92.8 93 54.8
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 8.4e-17 92.4 67 70.1
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-15 88.6 60 71.7
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-13 82.0 62 71.0
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.5e-13 80.9 62 64.5
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.5e-13 80.9 89 57.3
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.6e-12 78.2 62 62.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.1e-11 75.5 303 28.7
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.1e-11 75.5 62 61.3
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 4.1e-11 73.6 118 35.6
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-10 71.2 125 40.8
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-07 61.2 60 58.3


User provided reference genes

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