Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005936.2 Cucumis melo HOM05D006867 ORTHO05D008676 2.2e-207 725.3 352 100.0
CsaV3_3G007140 Cucumis sativus L. HOM05D006867 ORTHO05D008676 6.2e-202 707.2 354 97.5
ClCG05G000080 Citrullus lanatus HOM05D006867 ORTHO05D008676 2.5e-195 685.3 354 95.2
Sed0008932 Sechium edule HOM05D006867 ORTHO05D008676 1.3e-183 646.4 350 90.3
Cfa003709 Carpinus fangiana HOM05D006867 ORTHO05D008676 1.5e-147 526.6 339 75.2
QL08p048171 Quercus lobata HOM05D006867 ORTHO05D008676 4.9e-146 521.5 345 71.0
Haze_15774 Corylus avellana HOM05D006867 ORTHO05D008676 6.4e-146 521.2 339 74.3
Potri.002G183500 Populus trichocarpa HOM05D006867 ORTHO05D008676 4.7e-141 505.0 352 69.9
Cpa.g.sc1043.2 Carica papaya HOM05D006867 ORTHO05D008676 7.5e-139 497.7 354 67.5
CiPaw.02G046400 Carya illinoinensis HOM05D006867 ORTHO05D008676 9.8e-139 497.3 337 69.1
Dinv32661 Davidia involucrata HOM05D006867 ORTHO05D008676 2.2e-138 496.1 351 67.2
Manes.01G237400 Manihot esculenta HOM05D006867 ORTHO05D008676 8.3e-138 494.2 352 67.3
Potri.014G109500 Populus trichocarpa HOM05D006867 ORTHO05D008676 3.2e-137 492.3 351 68.4
Ciclev10019260m.g Citrus clementina HOM05D006867 ORTHO05D008676 4.6e-136 488.4 354 67.2
COL.COLO4_23081 Corchorus olitorius HOM05D006867 ORTHO05D008676 6.0e-136 488.0 353 66.3
GSVIVG01027485001 Vitis vinifera HOM05D006867 ORTHO05D008676 1.7e-135 486.5 351 67.2
Sabra02G0132100 Salix brachista HOM05D006867 ORTHO05D008676 3.0e-135 485.7 351 67.5
Actinidia08011 Actinidia chinensis HOM05D006867 ORTHO05D008676 1.5e-134 483.4 349 65.9
Sabra14G0080800 Salix brachista HOM05D006867 ORTHO05D008676 1.9e-134 483.0 335 70.1
Phvul.010G121700 Phaseolus vulgaris HOM05D006867 ORTHO05D008676 9.5e-134 480.7 351 66.7
Glyma.07G047300 Glycine max HOM05D006867 ORTHO05D008676 1.6e-133 479.9 352 66.8
Glyma.16G015800 Glycine max HOM05D006867 ORTHO05D008676 1.6e-133 479.9 352 66.8
Prupe.2G203900 Prunus persica HOM05D006867 ORTHO05D008676 1.6e-133 479.9 351 66.1
Cc00_g15760 Coffea canephora HOM05D006867 ORTHO05D008676 2.8e-133 479.2 350 65.4
Atru.chr5.813 Acer truncatum HOM05D006867 ORTHO05D008676 3.6e-133 478.8 352 65.6
CANSAT56G0208 Cannabis sativa HOM05D006867 ORTHO05D008676 9.8e-131 470.7 344 64.2
Thecc.01G329400 Theobroma cacao HOM05D006867 ORTHO05D008676 1.3e-130 470.3 360 64.7
Lj3g0022605 Lotus japonicus HOM05D006867 ORTHO05D008676 4.9e-130 468.4 345 66.4
RcHm_v2.0_Chr1g0361851 Rosa chinensis HOM05D006867 ORTHO05D008676 6.4e-130 468.0 349 63.3
CANSAT56G2490 Cannabis sativa HOM05D006867 ORTHO05D008676 8.3e-130 467.6 344 64.0
VMungo0331G1883 Vigna mungo HOM05D006867 ORTHO05D008676 1.1e-129 467.2 354 65.0
Lj9A610G56 Lonicera japonica HOM05D006867 ORTHO05D008676 7.1e-129 464.5 359 63.8
arahy.Tifrunner.gnm1.ann1.L7530T Arachis hypogaea HOM05D006867 ORTHO05D008676 1.2e-128 463.8 374 61.2
Nitab4.5_0004754g0040 Nicotiana tabacum HOM05D006867 ORTHO05D008676 2.1e-128 463.0 350 62.9
THA.LOC104817409 Tarenaya hassleriana HOM05D006867 ORTHO05D008676 2.1e-128 463.0 357 62.2
Aa31LG1G28260 Aethionema arabicum HOM05D006867 ORTHO05D008676 4.6e-128 461.8 359 62.4
Nitab4.5_0000348g0180 Nicotiana tabacum HOM05D006867 ORTHO05D008676 4.6e-128 461.8 350 63.4
vmacro08516 Vaccinium macrocarpon HOM05D006867 ORTHO05D008676 6.0e-128 461.5 355 65.1
arahy.Tifrunner.gnm1.ann1.Y7T28V Arachis hypogaea HOM05D006867 ORTHO05D008676 7.8e-128 461.1 374 61.0
FAN10G4369 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.0e-127 460.7 349 62.2
TAR629G2918 Trochodendron aralioides HOM05D006867 ORTHO05D008676 1.3e-127 460.3 350 63.7
Gorai.008G133000 Gossypium raimondii HOM05D006867 ORTHO05D008676 1.7e-127 459.9 351 63.2
Oeu032684.1 Olea europaea HOM05D006867 ORTHO05D008676 3.0e-127 459.1 349 64.2
Gohir.A12G118400 Gossypium hirsutum HOM05D006867 ORTHO05D008676 3.9e-127 458.8 351 63.0
FAN01G1143 Fragaria x ananassa HOM05D006867 ORTHO05D008676 5.1e-127 458.4 349 62.2
FAN03G0961 Fragaria x ananassa HOM05D006867 ORTHO05D008676 5.1e-127 458.4 349 62.2
FAN10G3600 Fragaria x ananassa HOM05D006867 ORTHO05D008676 5.1e-127 458.4 349 62.2
Lalb_Chr10g0101011 Lupinus albus HOM05D006867 ORTHO05D008676 5.1e-127 458.4 350 64.6
FvH4_7g18270 Fragaria vesca HOM05D006867 ORTHO05D008676 1.1e-126 457.2 349 62.2
FAN06G3784 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.1e-126 457.2 349 62.2
Gohir.D12G122200 Gossypium hirsutum HOM05D006867 ORTHO05D008676 1.1e-126 457.2 351 62.7
FAN06G0390 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.5e-126 456.1 349 61.9
Lalb_Chr17g0343131 Lupinus albus HOM05D006867 ORTHO05D008676 3.3e-126 455.7 360 63.1
Peaxi162Scf01205g00180 Petunia axillaris HOM05D006867 ORTHO05D008676 3.3e-126 455.7 348 63.5
Ca_23461_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 9.5e-126 454.1 352 62.5
Ca_23474_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 9.5e-126 454.1 352 62.5
Sopen08g006420 Solanum pennellii HOM05D006867 ORTHO05D008676 1.2e-125 453.8 350 61.7
CAN.G90.6 Capsicum annuum HOM05D006867 ORTHO05D008676 3.6e-125 452.2 350 62.0
MD01G1098500 Malus domestica HOM05D006867 ORTHO05D008676 8.1e-125 451.1 350 62.0
MBI11_g13783_MAGBIO Magnolia biondii HOM05D006867 ORTHO05D008676 1.1e-124 450.7 349 60.2
ATR0824G236 Amborella trichopoda HOM05D006867 ORTHO05D008676 3.1e-124 449.1 351 59.8
MD07G1165200 Malus domestica HOM05D006867 ORTHO05D008676 3.1e-124 449.1 347 62.8
TPR.G32787 Trifolium pratense HOM05D006867 ORTHO05D008676 3.1e-124 449.1 352 62.2
Medtr8g023750 Medicago truncatula HOM05D006867 ORTHO05D008676 5.2e-124 448.4 352 62.5
Psat0s2980g0160 Pisum sativum HOM05D006867 ORTHO05D008676 5.2e-124 448.4 334 64.1
Lsat_1_v5_gn_3_39660 Lactuca sativa HOM05D006867 ORTHO05D008676 1.2e-123 447.2 357 60.2
Eucgr.L00743 Eucalyptus grandis HOM05D006867 ORTHO05D008676 1.5e-123 446.8 341 62.5
HanXRQChr17g0542101 Helianthus annuus HOM05D006867 ORTHO05D008676 3.4e-123 445.7 350 60.9
HanXRQChr15g0480381 Helianthus annuus HOM05D006867 ORTHO05D008676 7.6e-123 444.5 339 61.7
MSTRG.10869 Avicennia marina HOM05D006867 ORTHO05D008676 9.9e-123 444.1 349 63.0
FAN01G0521 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.2e-122 443.0 345 60.9
Sc08g0001320 Simmondsia chinensis HOM05D006867 ORTHO05D008676 1.9e-121 439.9 351 59.8
EL10Ac9g22256 Beta vulgaris HOM05D006867 ORTHO05D008676 3.2e-121 439.1 354 60.2
Migut.I01214 Erythranthe guttata HOM05D006867 ORTHO05D008676 5.4e-121 438.3 354 60.7
Aqoxy5G04385 Aquilegia oxysepala HOM05D006867 ORTHO05D008676 7.1e-121 438.0 350 60.3
Hund00158 Selenicereus undatus HOM05D006867 ORTHO05D008676 7.1e-121 438.0 355 59.7
SalBow6G1414 Salvia bowleyana HOM05D006867 ORTHO05D008676 1.0e-119 434.1 341 60.4
Ah.01g010880 Amaranthus hybridus HOM05D006867 ORTHO05D008676 4.3e-118 428.7 354 59.0
AL4G46360 Arabidopsis lyrata HOM05D006867 ORTHO05D008676 5.6e-118 428.3 341 58.9
TWI59G0124 Tripterygium wilfordii HOM05D006867 ORTHO05D008676 2.1e-117 426.4 351 61.5
PSO782G1247 Papaver somniferum HOM05D006867 ORTHO05D008676 3.6e-117 425.6 375 56.0
Rhsim04G0175800 Rhododendron simsii HOM05D006867 ORTHO05D008676 3.6e-117 425.6 324 64.2
AUR62010330 Chenopodium quinoa HOM05D006867 ORTHO05D008676 4.7e-117 425.2 354 59.3
Carub.0004s2962 Capsella rubella HOM05D006867 ORTHO05D008676 8.1e-117 424.5 347 58.5
CARHR142250 Cardamine hirsuta HOM05D006867 ORTHO05D008676 1.1e-116 424.1 356 57.6
SGA_v2.0_scaffold122G33256 Striga asiatica HOM05D006867 ORTHO05D008676 3.1e-116 422.5 337 59.9
AT2G46900 Arabidopsis thaliana HOM05D006867 ORTHO05D008676 5.2e-116 421.8 357 57.4
AUR62039056 Chenopodium quinoa HOM05D006867 ORTHO05D008676 8.9e-116 421.0 354 59.3
Thhalv10001357m.g Eutrema salsugineum HOM05D006867 ORTHO05D008676 7.6e-115 417.9 341 58.7
Zm00001eb102740 Zea mays HOM05D006867 ORTHO05D008676 7.6e-115 417.9 352 57.7
Sp4g28920 Schrenkiella parvula HOM05D006867 ORTHO05D008676 2.2e-114 416.4 341 57.8
ECA246G2438 Erigeron canadensis HOM05D006867 ORTHO05D008676 1.1e-113 414.1 336 58.9
Os09g0514900 Oryza sativa ssp. japonica HOM05D006867 ORTHO05D008676 3.2e-113 412.5 358 55.6
HPP92_013529 Vanilla planifolia HOM05D006867 ORTHO05D008676 4.2e-113 412.1 346 55.5
Hma1.2p1_0074F.1_g039020 Hydrangea macrophylla HOM05D006867 ORTHO05D008676 9.3e-113 411.0 284 68.0
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 9.6e-110 401.0 335 56.1
A05p00940 Brassica napus HOM05D006867 ORTHO05D008676 1.6e-109 400.2 340 55.6
BolC4t21761H Brassica oleracea HOM05D006867 ORTHO05D008676 8.1e-109 397.9 349 54.4
DCAR_022120 Daucus carota HOM05D006867 ORTHO05D008676 6.4e-98 361.7 342 54.7
CSS0030251 Camellia sinensis var. sinensis HOM05D006867 ORTHO05D008676 3.1e-92 342.8 257 62.6
BcaC02g12633 Brassica carinata HOM05D006867 ORTHO05D008676 4.1e-84 315.8 344 47.7
Pp3c1_12740 Physcomitrium patens HOM05D006867 ORTHO05D008676 7.6e-83 311.6 359 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4360 Anthoceros agrestis HOM05D006867 ORTHO05D008676 6.7e-79 298.5 295 50.5
SMO331G0055 Selaginella moellendorffii HOM05D006867 ORTHO05D008676 5.7e-78 295.4 336 44.0
Pp3c11_2510 Physcomitrium patens HOM05D006867 ORTHO05D008676 4.1e-76 289.3 313 46.6
Mapoly0002s0219 Marchantia polymorpha HOM05D006867 ORTHO05D008676 6.7e-71 271.9 365 39.7
CDE09G1372 Ceratophyllum demersum HOM05D006867 ORTHO05D008676 4.3e-70 269.2 314 45.2
Cre11.g467639 Chlamydomonas reinhardtii HOM05D006867 ORTHO05D008676 3.3e-54 216.5 382 34.3
CBR_g36359 Chara braunii HOM05D006867 ORTHO05D008676 6.5e-50 202.2 522 27.8
PRCOL_00004033 Prasinoderma coloniale HOM05D006867 ORTHO05D008676 5.9e-43 179.1 300 34.7
MCO10G037 Micromonas commoda HOM05D006867 ORTHO05D008676 4.7e-32 142.9 342 28.7
Solyc08g016090.4 Solanum lycopersicum HOM05D006867 ORTHO05D008676 3.0e-26 123.6 122 53.3
C04p72500 Brassica napus HOM05D006867 ORTHO05D008676 4.7e-16 89.7 65 60.0
BolC4t28738H Brassica oleracea HOM05D006867 ORTHO05D008676 4.7e-16 89.7 65 60.0
A04p34720 Brassica napus HOM05D006867 ORTHO05D008676 2.6e-14 84.0 65 56.9


User provided reference genes

Program Settings