Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005889.2 Cucumis melo HOM05D002242 ORTHO05D002275 1.9e-92 342.4 168 100.0
CsaV3_5G000440 Cucumis sativus L. HOM05D002242 ORTHO05D002275 1.9e-68 262.7 176 84.7
ClCG01G000400 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.6e-41 173.3 164 67.1
Sed0003282 Sechium edule HOM05D002242 ORTHO05D002275 4.2e-31 138.7 178 53.9
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 1.6e-17 93.6 206 39.8
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 2.0e-17 93.2 212 41.0
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 2.0e-17 93.2 202 41.1
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 1.7e-16 90.1 196 40.3
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 1.5e-15 87.0 216 38.0
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 2.5e-15 86.3 196 39.3
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 9.5e-15 84.3 203 38.9
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.2e-14 84.0 178 38.2
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.6e-14 83.6 203 38.9
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 1.6e-14 83.6 182 39.0
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.1e-14 83.2 180 38.3
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 2.8e-14 82.8 199 38.2
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.8e-14 82.8 203 38.4
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.7e-14 82.0 179 38.5
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 4.7e-14 82.0 210 39.5
AT4G27810 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 1.4e-13 80.5 177 39.0
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 1.4e-13 80.5 177 36.7
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.4e-13 80.5 177 36.7
THA.LOC104811912 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.4e-13 80.5 209 35.9
Thhalv10027290m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 2.3e-13 79.7 175 37.7
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 4.0e-13 79.0 199 37.7
TWI39G0876 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 4.0e-13 79.0 192 36.5
Psat6g034840 Pisum sativum HOM05D002242 ORTHO05D002275 6.8e-13 78.2 190 35.8
A02p11370 Brassica napus HOM05D002242 ORTHO05D002275 8.9e-13 77.8 213 35.7
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 8.9e-13 77.8 207 37.2
MD01G1217700 Malus domestica HOM05D002242 ORTHO05D002275 1.2e-12 77.4 201 36.3
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.2e-12 77.4 218 33.5
Sp7g25790 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.2e-12 77.4 175 38.3
C01p24200 Brassica napus HOM05D002242 ORTHO05D002275 1.5e-12 77.0 174 36.2
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 1.5e-12 77.0 190 37.9
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 1.5e-12 77.0 199 38.7
BcaC09g50536 Brassica carinata HOM05D002242 ORTHO05D002275 2.0e-12 76.6 174 36.2
BolC1t02376H Brassica oleracea HOM05D002242 ORTHO05D002275 2.0e-12 76.6 174 36.2
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 2.0e-12 76.6 163 39.9
Medtr3g091680 Medicago truncatula HOM05D002242 ORTHO05D002275 2.0e-12 76.6 159 38.4
BraA01t01867Z Brassica rapa HOM05D002242 ORTHO05D002275 2.6e-12 76.3 174 36.2
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 3.4e-12 75.9 206 37.4
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 3.4e-12 75.9 203 38.9
BcaC03g14465 Brassica carinata HOM05D002242 ORTHO05D002275 4.4e-12 75.5 218 34.4
Thhalv10014570m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 4.4e-12 75.5 218 33.0
A01p19250 Brassica napus HOM05D002242 ORTHO05D002275 5.7e-12 75.1 174 37.4
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 5.7e-12 75.1 223 32.7
CARHR266040 Cardamine hirsuta HOM05D002242 ORTHO05D002275 5.7e-12 75.1 212 34.0
MD07G1286900 Malus domestica HOM05D002242 ORTHO05D002275 5.7e-12 75.1 199 37.7
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 5.7e-12 75.1 167 37.1
AL7G24830 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 7.5e-12 74.7 175 36.6
C07p55720 Brassica napus HOM05D002242 ORTHO05D002275 7.5e-12 74.7 169 37.3
CARHR235540 Cardamine hirsuta HOM05D002242 ORTHO05D002275 7.5e-12 74.7 165 37.6
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 7.5e-12 74.7 213 37.1
BraA02t06201Z Brassica rapa HOM05D002242 ORTHO05D002275 9.8e-12 74.3 216 35.6
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 9.8e-12 74.3 226 36.7
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 1.3e-11 73.9 223 32.7
Carub.0007s1301 Capsella rubella HOM05D002242 ORTHO05D002275 1.3e-11 73.9 180 37.2
VMungo0647G2336 Vigna mungo HOM05D002242 ORTHO05D002275 1.3e-11 73.9 167 39.5
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.7e-11 73.6 194 35.1
BolC7t46052H Brassica oleracea HOM05D002242 ORTHO05D002275 1.7e-11 73.6 169 36.7
BcaNung01619 Brassica carinata HOM05D002242 ORTHO05D002275 2.2e-11 73.2 172 39.0
Gorai.003G121500 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.2e-11 73.2 189 37.6
C02p18780 Brassica napus HOM05D002242 ORTHO05D002275 3.7e-11 72.4 230 33.5
BolC2t08023H Brassica oleracea HOM05D002242 ORTHO05D002275 3.7e-11 72.4 230 33.5
CiPaw.05G197700 Carya illinoinensis HOM05D002242 ORTHO05D002275 3.7e-11 72.4 190 35.3
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 4.9e-11 72.0 172 37.8
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 6.4e-11 71.6 219 33.3
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 6.4e-11 71.6 218 34.4
A03p57530 Brassica napus HOM05D002242 ORTHO05D002275 6.4e-11 71.6 172 38.4
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 6.4e-11 71.6 222 31.1
BraA03t14821Z Brassica rapa HOM05D002242 ORTHO05D002275 6.4e-11 71.6 172 38.4
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 6.4e-11 71.6 159 40.9
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 8.3e-11 71.2 126 44.4
TPR.G18779 Trifolium pratense HOM05D002242 ORTHO05D002275 8.3e-11 71.2 163 36.2
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 1.1e-10 70.9 216 36.6
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.4e-10 70.5 159 40.3
Gohir.D03G115200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.8e-10 70.1 189 36.5
Ca_16716_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 3.2e-10 69.3 149 36.9
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 4.1e-10 68.9 224 31.2
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 4.1e-10 68.9 212 34.4
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 5.4e-10 68.6 179 35.2
Psat5g078440 Pisum sativum HOM05D002242 ORTHO05D002275 5.4e-10 68.6 163 38.0
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 5.4e-10 68.6 203 36.0
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 5.4e-10 68.6 206 34.0
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 7.0e-10 68.2 121 44.6
Sc25g0000930 Simmondsia chinensis HOM05D002242 ORTHO05D002275 7.0e-10 68.2 164 39.0
Ciclev10021848m.g Citrus clementina HOM05D002242 ORTHO05D002275 9.2e-10 67.8 240 30.8
Phvul.001G075100 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 9.2e-10 67.8 167 38.3
Sed0027126 Sechium edule HOM05D002242 ORTHO05D002275 1.2e-09 67.4 143 37.8
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 2.0e-09 66.6 91 49.5
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.0e-09 66.6 205 34.6
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 2.0e-09 66.6 216 32.9
CANSAT21G1534 Cannabis sativa HOM05D002242 ORTHO05D002275 2.7e-09 66.2 199 34.2
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 2.7e-09 66.2 94 43.6
BcaB08g35662 Brassica carinata HOM05D002242 ORTHO05D002275 4.6e-09 65.5 224 31.2
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 4.6e-09 65.5 197 36.5
Gohir.A03G051900 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.9e-09 65.1 189 37.0
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 5.9e-09 65.1 198 32.3
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 7.8e-09 64.7 202 33.7
Lj1g0024457 Lotus japonicus HOM05D002242 ORTHO05D002275 7.8e-09 64.7 171 37.4
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 7.8e-09 64.7 91 49.5
Sopen03g022850 Solanum pennellii HOM05D002242 ORTHO05D002275 7.8e-09 64.7 196 36.2
SGA_v2.0_scaffold44G16810 Striga asiatica HOM05D002242 ORTHO05D002275 1.7e-08 63.5 113 45.1
TPR.G12108 Trifolium pratense HOM05D002242 ORTHO05D002275 2.3e-08 63.2 202 32.7
CAN.G481.20 Capsicum annuum HOM05D002242 ORTHO05D002275 3.0e-08 62.8 216 32.4
SalBow2G3365 Salvia bowleyana HOM05D002242 ORTHO05D002275 3.0e-08 62.8 195 37.4
Ah.13g070390 Amaranthus hybridus HOM05D002242 ORTHO05D002275 3.9e-08 62.4 88 47.7
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.9e-08 62.4 202 33.2
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 3.9e-08 62.4 209 34.4
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 6.6e-08 61.6 219 32.0
BcaC06g32661 Brassica carinata HOM05D002242 ORTHO05D002275 6.6e-08 61.6 165 37.0
Ca_12789_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 6.6e-08 61.6 100 45.0
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 6.6e-08 61.6 197 31.5
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 8.6e-08 61.2 133 44.4
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 8.6e-08 61.2 213 32.4
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 8.6e-08 61.2 213 32.4
HanXRQChr17g0563391 Helianthus annuus HOM05D002242 ORTHO05D002275 8.6e-08 61.2 215 31.6
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 1.1e-07 60.8 130 43.8
Sed0023472 Sechium edule HOM05D002242 ORTHO05D002275 1.1e-07 60.8 191 31.4
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 1.1e-07 60.8 115 40.9
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 1.5e-07 60.5 232 31.5
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 1.5e-07 60.5 100 47.0
Peaxi162Scf00740g00136 Petunia axillaris HOM05D002242 ORTHO05D002275 1.5e-07 60.5 223 35.0
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 1.5e-07 60.5 198 35.9
PGSC0003DMG400018549 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.5e-07 60.5 238 32.8
CsaV3_3G019790 Cucumis sativus L. HOM05D002242 ORTHO05D002275 1.9e-07 60.1 213 32.4
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.9e-07 60.1 221 32.1
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.5e-07 59.7 116 41.4
EL10Ac3g05266 Beta vulgaris HOM05D002242 ORTHO05D002275 3.3e-07 59.3 91 47.3
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 4.3e-07 58.9 136 41.9
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 4.3e-07 58.9 180 33.3
Lsat_1_v5_gn_6_85600 Lactuca sativa HOM05D002242 ORTHO05D002275 4.3e-07 58.9 100 47.0
Prupe.6G127900 Prunus persica HOM05D002242 ORTHO05D002275 4.3e-07 58.9 74 52.7
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 5.6e-07 58.5 212 33.5
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 5.6e-07 58.5 233 32.6
HanXRQChr04g0112041 Helianthus annuus HOM05D002242 ORTHO05D002275 5.6e-07 58.5 218 30.7
MSTRG.8647 Avicennia marina HOM05D002242 ORTHO05D002275 7.3e-07 58.2 189 32.8
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 7.3e-07 58.2 157 35.7
DCAR_020326 Daucus carota HOM05D002242 ORTHO05D002275 7.3e-07 58.2 181 34.3
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 7.3e-07 58.2 99 46.5
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 9.5e-07 57.8 105 43.8
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 9.5e-07 57.8 118 39.0
Nitab4.5_0007888g0030 Nicotiana tabacum HOM05D002242 ORTHO05D002275 9.5e-07 57.8 141 40.4
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 9.5e-07 57.8 86 52.3
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 1.2e-06 57.4 216 32.9
Lalb_Chr08g0240171 Lupinus albus HOM05D002242 ORTHO05D002275 1.2e-06 57.4 189 34.4
arahy.Tifrunner.gnm1.ann1.N8QUMN Arachis hypogaea HOM05D002242 ORTHO05D002275 2.1e-06 56.6 159 36.5
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 2.1e-06 56.6 88 47.7
C09p42730 Brassica napus HOM05D002242 ORTHO05D002275 2.8e-06 56.2 158 34.8
BolC9t57149H Brassica oleracea HOM05D002242 ORTHO05D002275 2.8e-06 56.2 158 34.8
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.8e-06 56.2 116 41.4
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 3.6e-06 55.8 94 46.8
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.6e-06 55.8 87 44.8
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 3.6e-06 55.8 104 47.1
PSO782G1347 Papaver somniferum HOM05D002242 ORTHO05D002275 3.6e-06 55.8 104 47.1
Peaxi162Scf00716g00032 Petunia axillaris HOM05D000078 ORTHO05D000025 3.6e-06 55.8 93 46.2
ATR0602G287 Amborella trichopoda HOM05D002242 ORTHO05D002275 4.7e-06 55.5 129 41.1
AT5G53030 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 4.7e-06 55.5 198 31.3
ClCG05G008990 Citrullus lanatus HOM05D002242 ORTHO05D002275 4.7e-06 55.5 215 33.5
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 4.7e-06 55.5 75 48.0
SalBow5G1307 Salvia bowleyana HOM05D002242 ORTHO05D002275 4.7e-06 55.5 102 40.2
Aa31LG3G9450 Aethionema arabicum HOM05D002242 ORTHO05D002275 6.2e-06 55.1 208 30.3
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 6.2e-06 55.1 203 30.0
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 6.2e-06 55.1 118 44.1
Oeu041061.1 Olea europaea HOM05D002242 ORTHO05D002275 6.2e-06 55.1 111 42.3
CsaV3_6G008510 Cucumis sativus L. HOM05D002242 ORTHO05D002275 8.0e-06 54.7 197 35.0


User provided reference genes

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