Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 3.5e-135 485.0 244 100.0
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 4.8e-108 394.8 222 93.2
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 2.4e-96 355.9 221 83.7
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 2.0e-61 240.0 218 66.1
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 9.5e-40 167.9 247 47.8
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.6e-39 167.2 227 50.2
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 3.6e-39 166.0 244 47.1
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 4.7e-39 165.6 227 48.0
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 4.7e-39 165.6 232 50.0
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 8.0e-39 164.9 245 48.2
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.8e-38 163.7 229 48.5
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 3.0e-38 162.9 245 47.8
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.0e-38 162.9 245 47.8
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 3.0e-38 162.9 248 46.4
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 3.0e-38 162.9 234 48.3
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 5.2e-38 162.2 227 50.2
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 6.8e-38 161.8 230 50.0
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 6.8e-38 161.8 236 49.2
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 6.8e-38 161.8 226 48.2
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 8.9e-38 161.4 230 47.4
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 8.9e-38 161.4 228 48.7
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.2e-37 161.0 230 47.4
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.2e-37 161.0 245 48.6
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.2e-37 161.0 232 49.1
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.2e-37 161.0 232 49.1
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.2e-37 161.0 228 47.8
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.5e-37 160.6 229 47.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 2.0e-37 160.2 232 48.7
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.4e-37 159.5 245 46.9
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.4e-37 159.5 245 46.9
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.4e-37 159.5 229 48.5
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 7.5e-37 158.3 236 47.9
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 7.5e-37 158.3 226 48.7
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 9.8e-37 157.9 229 49.3
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 9.8e-37 157.9 227 47.6
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 1.3e-36 157.5 228 46.9
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 1.3e-36 157.5 229 49.3
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.7e-36 157.1 237 48.1
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 2.2e-36 156.8 230 46.5
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 2.8e-36 156.4 228 47.4
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 3.7e-36 156.0 227 48.9
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.8e-35 153.7 240 45.8
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.8e-35 153.7 229 45.4
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 4.1e-35 152.5 240 45.8
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 7.0e-35 151.8 240 46.7
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.2e-34 151.0 228 45.2
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 1.2e-34 151.0 227 46.7
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 1.6e-34 150.6 228 45.2
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.0e-34 150.2 264 44.7
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 2.7e-34 149.8 239 43.1
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 4.5e-34 149.1 264 43.6
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 4.5e-34 149.1 225 48.0
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 7.8e-34 148.3 234 44.9
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.0e-33 147.9 264 45.1
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.3e-33 147.5 230 47.8
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 5.0e-33 145.6 231 44.6
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 6.6e-33 145.2 241 44.4
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 8.6e-33 144.8 222 45.5
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 8.6e-33 144.8 242 45.5
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 8.6e-33 144.8 239 43.9
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 1.5e-32 144.1 228 46.9
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.5e-32 144.1 234 44.4
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.9e-32 143.7 227 44.9
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 2.5e-32 143.3 227 46.3
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 4.3e-32 142.5 220 45.5
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 5.6e-32 142.1 230 43.9
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.6e-32 142.1 232 42.2
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 7.3e-32 141.7 228 45.6
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 9.5e-32 141.4 252 44.4
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 9.5e-32 141.4 226 43.8
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 9.5e-32 141.4 231 43.7
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.1e-31 140.2 229 43.7
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.1e-31 140.2 226 45.6
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 2.1e-31 140.2 225 43.6
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 2.1e-31 140.2 237 43.9
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 4.7e-31 139.0 238 42.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 4.7e-31 139.0 230 44.3
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 8.0e-31 138.3 229 43.2
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.3e-30 136.7 227 43.6
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 3.1e-30 136.3 240 42.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 3.1e-30 136.3 229 44.5
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 3.1e-30 136.3 243 41.6
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 5.2e-30 135.6 225 44.4
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.0e-29 133.7 223 41.7
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 2.6e-29 133.3 255 41.2
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.6e-29 133.3 228 44.3
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.2e-28 130.2 228 39.5
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.9e-28 129.8 230 43.5
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 3.7e-28 129.4 248 38.7
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 4.9e-28 129.0 233 40.8
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.1e-27 127.9 233 40.3
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.9e-27 127.1 237 40.5
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.2e-27 126.3 235 42.1
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 1.2e-26 124.4 243 40.3
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 3.5e-26 122.9 231 40.3
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.5e-26 122.9 224 39.7
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.5e-26 122.9 227 40.5
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.3e-25 120.2 166 48.8
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 2.3e-25 120.2 231 41.1
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.1e-24 117.9 245 39.6
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.1e-24 117.9 235 42.6
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 2.5e-24 116.7 225 41.3
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 4.3e-24 115.9 222 41.0
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 7.3e-24 115.2 224 40.6
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 9.5e-24 114.8 224 38.4
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 9.5e-24 114.8 224 38.8
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 9.5e-24 114.8 220 38.6
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.6e-23 114.0 227 38.8
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.8e-23 113.2 233 41.2
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 1.4e-22 110.9 225 36.4
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 1.4e-22 110.9 240 36.7
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.8e-22 110.5 232 37.5
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 3.1e-22 109.8 231 38.5
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 5.2e-22 109.0 227 37.0
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 5.2e-22 109.0 239 41.4
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 5.2e-22 109.0 236 37.7
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 6.8e-22 108.6 238 36.1
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 6.8e-22 108.6 238 36.1
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.5e-21 107.5 239 36.4
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.5e-21 107.5 239 36.4
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 2.0e-21 107.1 233 35.6
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 2.0e-21 107.1 233 35.6
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 2.6e-21 106.7 215 40.5
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.3e-20 104.4 235 36.2
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 1.3e-20 104.4 227 34.4
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.3e-20 104.4 189 42.3
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 1.7e-20 104.0 231 34.6
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 1.7e-20 104.0 231 34.6
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 1.7e-20 104.0 200 37.0
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 2.9e-20 103.2 232 34.5
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 2.9e-20 103.2 252 36.5
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 4.9e-20 102.4 231 34.6
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 8.3e-20 101.7 234 34.6
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 8.3e-20 101.7 233 36.1
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 8.3e-20 101.7 236 34.3
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 1.1e-19 101.3 189 39.7
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.2e-19 99.8 189 38.6
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 2.1e-18 97.1 230 34.3
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 4.6e-18 95.9 236 33.9
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 6.0e-18 95.5 225 36.9
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 1.3e-17 94.4 194 35.1
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.7e-17 94.0 100 57.0
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 2.3e-17 93.6 219 33.8
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 3.9e-17 92.8 221 33.5
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 3.9e-17 92.8 221 33.5
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.5e-16 90.9 216 37.0
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 2.1e-15 87.0 217 36.4
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 2.8e-15 86.7 216 36.6
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 2.8e-15 86.7 230 33.0
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 4.7e-15 85.9 185 37.8
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 1.5e-13 80.9 251 31.5
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 2.6e-13 80.1 238 28.6
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.7e-12 77.4 98 55.1
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 4.9e-12 75.9 230 31.7
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 1.6e-10 70.9 238 29.0
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 2.7e-10 70.1 153 35.9
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 2.7e-10 70.1 237 32.5
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 1.0e-09 68.2 163 31.9
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.0e-09 68.2 231 28.1
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.0e-09 68.2 231 28.1
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 1.3e-09 67.8 240 30.8
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-09 67.4 231 27.7
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.0e-09 66.6 164 36.6
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.9e-09 66.2 223 31.8
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 7.3e-08 62.0 245 29.8
HPP92_023968 Vanilla planifolia HOM05D025792 ORTHO05D030716 1.2e-07 61.2 247 27.9
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.6e-07 60.8 244 29.9
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 1.6e-07 60.8 232 27.2
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.1e-07 60.5 294 24.1
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 2.8e-07 60.1 168 36.9
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 2.8e-07 60.1 168 36.9
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 2.8e-07 60.1 180 32.2
CDE10G0893 Ceratophyllum demersum HOM05D002932 ORTHO05D003208 3.6e-07 59.7 97 40.2
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 8.1e-07 58.5 228 26.8
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.8e-06 57.4 252 29.0
CDE04G1414 Ceratophyllum demersum HOM05D002932 ORTHO05D003208 2.4e-06 57.0 98 39.8
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 2.4e-06 57.0 278 24.8
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.1e-06 56.6 232 28.4
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 3.1e-06 56.6 251 27.1
ATR1093G035 Amborella trichopoda HOM05D002932 ORTHO05D003208 4.0e-06 56.2 218 31.7
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 4.0e-06 56.2 296 25.0
PGSC0003DMG400028894 Solanum tuberosum HOM05D002932 ORTHO05D003208 5.2e-06 55.8 193 28.0
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 5.2e-06 55.8 231 27.7
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 6.8e-06 55.5 260 25.8


User provided reference genes

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