Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 0.0e+00 2554.2 1326 100.0
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 2079.7 1328 85.5
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1930.2 1430 75.8
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1807.3 1328 75.9
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1148.7 1331 51.4
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1138.3 1331 50.6
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1137.5 1350 51.0
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1130.9 1329 51.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1129.8 1337 50.6
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1124.4 1328 50.5
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1119.8 1343 50.1
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1118.6 1332 49.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1113.6 1331 49.8
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1113.2 1329 48.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1108.6 1334 49.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1101.3 1331 49.7
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1099.3 1328 49.2
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1095.1 1272 51.2
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1093.6 1326 49.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1085.5 1344 48.4
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.8e-311 1072.8 1269 51.4
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.4e-309 1065.1 1326 48.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 2.9e-308 1062.4 1340 47.5
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.1e-307 1060.4 1325 48.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.6e-301 1039.3 1332 48.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 7.4e-296 1021.1 1274 48.9
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.6e-290 1003.4 1318 47.3
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.1e-290 1003.0 1327 47.4
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 3.7e-287 992.3 1299 47.1
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 4.8e-287 991.9 1331 46.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.9e-283 979.9 1343 45.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 1.4e-278 963.8 1341 45.7
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 4.2e-275 952.2 1330 44.3
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 5.5e-275 951.8 1351 44.8
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.7e-274 949.5 1325 44.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.1e-274 948.3 1335 43.7
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 9.7e-272 941.0 1343 44.0
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 6.9e-270 934.9 1334 44.4
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.3e-268 930.6 1334 43.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 3.8e-268 929.1 1349 44.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 1.1e-264 917.5 1096 49.3
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 8.2e-263 911.4 1323 43.6
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.1e-262 911.0 921 57.5
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.1e-262 911.0 1346 42.9
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 4.1e-262 909.1 1189 46.4
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 7.7e-261 904.8 1415 41.3
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.2e-260 903.3 1340 44.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.2e-259 899.4 1338 43.6
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.1e-258 896.7 1231 46.1
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 5.2e-257 892.1 1298 44.8
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.8e-257 891.3 1339 42.3
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.3e-255 887.5 1341 42.7
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 1.3e-255 887.5 1326 42.7
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.3e-255 887.5 1337 42.3
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 2.6e-253 879.8 1330 42.3
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 4.2e-251 872.5 1332 41.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 4.2e-251 872.5 1332 41.9
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 3.6e-250 869.4 1334 42.2
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 4.0e-249 865.9 1335 42.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 2.2e-244 850.1 1335 42.8
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 4.4e-240 835.9 1329 41.8
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 3.7e-239 832.8 1312 42.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 7.0e-238 828.6 1154 44.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 5.9e-237 825.5 1154 44.4
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 3.2e-230 803.1 1155 43.8
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 2.9e-228 796.6 1152 43.8
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 8.9e-225 785.0 1246 42.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 5.8e-224 782.3 1347 38.5
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 7.0e-222 775.4 1156 43.3
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.3e-219 765.4 1221 41.8
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 4.0e-217 759.6 1361 39.4
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 5.8e-208 729.2 1311 39.4
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.1e-206 724.9 1157 41.3
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 6.8e-201 705.7 1340 36.8
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.7e-199 701.0 976 45.1
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.4e-192 676.8 974 44.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.9e-191 672.9 1136 41.3
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 9.6e-187 658.7 1569 33.8
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 3.8e-183 646.7 926 43.4
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 7.1e-182 642.5 700 53.3
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.1e-174 618.6 1006 40.7
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 5.5e-166 589.7 1031 39.0
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 3.5e-165 587.0 798 44.9
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.8e-164 584.7 545 60.0
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.3e-151 542.0 603 51.9
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 3.8e-151 540.4 632 51.9
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.7e-143 515.0 1044 34.8
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.2e-143 514.6 1138 33.0
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 6.5e-143 513.1 718 43.9
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.4e-123 447.6 526 49.8
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.7e-122 445.3 821 36.4
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.1e-117 428.3 695 40.3
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.2e-115 422.5 629 41.3
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 3.3e-110 404.4 692 39.7
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 6.0e-104 383.6 1311 28.3
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 5.8e-99 367.1 673 37.6
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 4.1e-97 360.9 563 40.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 4.4e-83 314.3 570 38.1
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.8e-77 294.3 419 44.4
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 4.5e-75 287.7 869 29.7
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.3e-63 248.8 520 36.5
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 8.4e-58 230.3 253 50.6
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.1e-57 229.9 485 35.5
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 3.7e-53 214.9 287 46.3
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 3.1e-52 211.8 167 67.7
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.2e-51 209.9 172 65.1
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.1e-49 203.4 982 26.0
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.4e-46 190.7 262 46.2
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.3e-44 184.5 262 44.7
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.2e-40 173.3 250 42.4
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.7e-37 162.9 416 29.8
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.8e-34 151.8 198 46.5
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.9e-33 149.4 309 33.7
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.2e-33 147.5 172 50.0
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.3e-31 142.5 134 54.5
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.9e-31 141.7 123 57.7
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.0e-30 139.4 282 33.0
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.3e-26 126.7 320 30.6
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.9e-26 125.6 102 61.8
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.1e-20 107.1 91 60.4
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 1.6e-19 103.2 134 49.3
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.7e-19 102.4 91 59.3
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.5e-19 101.7 98 50.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 7.7e-19 100.9 512 22.9
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 7.2e-17 94.4 97 52.6
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 2.3e-15 89.4 97 51.5
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.8e-15 87.4 99 43.4
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 2.0e-14 86.3 100 49.0
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.6e-14 85.9 81 51.9
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.4e-14 85.5 121 43.0
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.5e-14 84.3 65 66.2
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 9.8e-14 84.0 96 53.1
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 5.4e-12 78.2 99 46.5
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.0e-12 77.8 64 60.9
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-11 77.0 63 54.0
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.9e-10 72.4 76 48.7
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.0e-10 71.6 77 45.5
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.3e-09 68.9 96 46.9
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.5e-09 67.4 96 46.9
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 9.5e-09 67.4 72 51.4
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.8e-07 63.2 65 53.8
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 4.0e-07 62.0 102 42.2
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 3.4e-06 58.9 90 44.4


User provided reference genes

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