Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 9.1e-131 470.7 325 100.0
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 8.0e-111 404.4 329 90.0
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 3.0e-73 279.6 255 75.3
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 1.4e-67 260.8 334 60.8
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 8.4e-44 181.8 334 51.8
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 3.2e-43 179.9 328 41.5
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 4.2e-43 179.5 334 46.1
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.7e-42 176.8 333 49.2
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 8.7e-41 171.8 350 47.4
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 1.9e-40 170.6 248 47.2
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.9e-40 170.6 322 40.7
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 2.5e-40 170.2 324 43.2
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 7.4e-40 168.7 329 48.6
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 9.6e-40 168.3 333 44.4
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.8e-39 166.8 323 39.6
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 6.3e-39 165.6 338 45.9
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.4e-38 164.5 314 41.1
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.4e-38 164.5 316 43.7
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 2.4e-38 163.7 338 47.6
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 2.4e-38 163.7 325 48.9
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 2.4e-38 163.7 365 44.7
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 4.1e-38 162.9 318 47.5
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.1e-38 162.9 329 44.1
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 5.3e-38 162.5 316 44.9
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 5.3e-38 162.5 316 44.9
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 6.9e-38 162.2 160 75.0
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 6.9e-38 162.2 316 44.3
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 6.9e-38 162.2 248 54.0
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.2e-37 161.4 329 43.5
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 2.0e-37 160.6 336 50.3
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 2.6e-37 160.2 354 43.8
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 1.3e-36 157.9 323 44.0
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 1.3e-36 157.9 345 42.6
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 5.0e-36 156.0 336 44.3
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 1.4e-35 154.5 347 36.9
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 3.2e-35 153.3 315 45.7
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 3.2e-35 153.3 264 50.4
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 5.5e-35 152.5 246 52.0
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 9.3e-35 151.8 315 45.4
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 1.2e-34 151.4 315 44.8
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.2e-34 151.4 312 45.5
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 1.2e-34 151.4 349 43.8
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.2e-34 151.4 366 36.9
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 1.6e-34 151.0 315 38.7
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 2.7e-34 150.2 324 44.4
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 6.1e-34 149.1 380 42.9
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 6.1e-34 149.1 248 49.6
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 6.1e-34 149.1 248 49.2
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 7.9e-34 148.7 336 43.8
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 5.1e-33 146.0 335 44.8
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 6.7e-33 145.6 326 46.3
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 6.7e-33 145.6 334 35.9
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 6.7e-33 145.6 317 42.9
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 2.5e-32 143.7 311 45.0
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.5e-32 143.7 251 50.2
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.5e-32 143.7 255 50.6
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 2.5e-32 143.7 328 43.0
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 3.3e-32 143.3 322 43.5
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.5e-29 132.9 314 38.9
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 7.7e-29 132.1 283 44.5
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 1.0e-28 131.7 315 40.6
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 2.2e-28 130.6 315 41.3
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 3.8e-28 129.8 317 46.4
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 1.1e-27 128.3 311 40.2
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 1.1e-27 128.3 275 43.6
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.4e-27 127.9 249 38.6
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 5.5e-27 125.9 249 38.6
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 2.8e-23 113.6 306 42.2
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.6e-21 107.1 241 41.5
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 3.4e-21 106.7 299 36.5
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 4.5e-21 106.3 313 36.7
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 1.3e-20 104.8 312 36.5
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 6.5e-20 102.4 245 35.1
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 6.1e-18 95.9 235 35.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 1.8e-17 94.4 331 37.8
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 6.7e-17 92.4 310 39.0
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 1.1e-16 91.7 336 38.1
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 3.3e-16 90.1 256 30.5
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 4.4e-16 89.7 276 39.5
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 5.7e-16 89.4 174 37.4
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 3.7e-15 86.7 322 28.0
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 6.3e-15 85.9 257 30.7
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 8.2e-15 85.5 241 37.8
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 8.2e-15 85.5 241 37.8
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 1.1e-14 85.1 312 35.9
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.8e-14 84.3 315 32.1
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 3.1e-14 83.6 241 36.9
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 3.1e-14 83.6 241 36.9
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 1.7e-12 77.8 253 35.2
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 2.2e-12 77.4 192 34.4
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.5e-11 74.7 229 30.6
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 3.6e-10 70.1 241 36.1
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.4e-09 68.2 63 63.5
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 1.2e-08 65.1 216 38.0
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 7.5e-08 62.4 321 31.5
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 1.7e-07 61.2 321 32.4
Migut.M01315 Erythranthe guttata HOM05D002166 ORTHO05D002634 1.7e-07 61.2 238 27.7
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 1.1e-06 58.5 55 61.8
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 1.1e-06 58.5 314 25.2
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.8e-06 57.8 73 43.8


User provided reference genes

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