Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.5e-107 392.9 197 100.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-101 373.2 197 95.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.0e-100 370.2 197 94.4
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.9e-92 341.7 192 88.5
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 9.8e-88 327.0 192 85.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.7e-77 292.4 180 78.3
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.3e-76 290.0 180 76.7
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 2.3e-76 289.3 196 71.9
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.5e-75 286.6 179 76.5
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.9e-75 286.2 180 76.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.3e-75 285.0 193 70.5
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 5.6e-75 284.6 180 77.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.3e-75 284.3 193 71.5
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.2e-74 283.5 178 78.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.6e-74 283.1 196 73.0
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.6e-74 283.1 184 73.9
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-74 283.1 195 70.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-74 283.1 184 73.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.1e-74 282.7 180 75.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.8e-74 282.3 180 75.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.6e-74 282.0 180 75.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.6e-74 282.0 193 71.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 4.7e-74 281.6 180 74.4
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.2e-74 281.2 189 74.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 6.2e-74 281.2 179 74.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.1e-74 280.8 179 73.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-73 279.6 178 75.8
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-73 279.6 178 75.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.8e-73 279.6 189 72.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.1e-73 278.9 180 75.0
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 5.2e-73 278.1 179 75.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.8e-73 277.7 189 71.4
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-72 276.6 180 72.8
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.5e-72 276.6 179 76.0
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-72 276.2 180 72.8
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.0e-72 276.2 189 71.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.0e-72 276.2 189 70.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-72 276.2 181 74.6
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.4e-72 275.4 179 76.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.4e-72 275.4 179 76.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.4e-72 275.4 192 68.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.4e-72 275.4 193 71.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.4e-72 275.0 194 70.1
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 5.8e-72 274.6 179 73.2
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.6e-72 274.2 179 73.7
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 7.6e-72 274.2 179 74.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 9.9e-72 273.9 166 80.7
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 9.9e-72 273.9 192 69.8
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.7e-71 273.1 184 71.7
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 8.4e-71 270.8 180 73.9
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-70 270.4 204 68.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.4e-70 269.2 178 73.0
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.4e-70 269.2 180 70.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.2e-70 268.9 179 72.1
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.2e-70 268.9 187 70.6
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.2e-70 268.9 195 70.3
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 3.2e-70 268.9 189 68.3
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.2e-70 268.5 178 72.5
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 4.2e-70 268.5 196 67.9
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 5.4e-70 268.1 178 75.3
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 7.1e-70 267.7 166 77.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 7.1e-70 267.7 179 74.9
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.1e-70 267.7 179 74.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 7.1e-70 267.7 184 69.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.2e-69 266.9 183 72.7
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-69 266.2 179 70.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.1e-69 266.2 192 70.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.1e-69 266.2 177 75.1
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.7e-69 265.8 178 73.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-69 265.4 180 72.2
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 4.6e-69 265.0 178 73.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.6e-69 265.0 178 73.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.6e-69 265.0 178 73.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.6e-69 265.0 179 73.7
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 7.8e-69 264.2 204 66.7
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 7.8e-69 264.2 195 69.2
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 7.8e-69 264.2 195 68.2
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.7e-68 263.1 185 69.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.3e-68 262.7 178 73.0
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.3e-68 262.7 178 73.6
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.3e-68 262.7 213 63.4
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.3e-68 262.7 186 67.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.0e-68 262.3 178 72.5
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 3.0e-68 262.3 178 72.5
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.0e-68 262.3 179 72.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.9e-68 261.9 180 69.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.9e-68 261.9 180 71.1
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.1e-68 261.5 193 67.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.1e-68 261.5 179 73.2
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 6.6e-68 261.2 193 66.8
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.6e-68 261.2 178 73.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 6.6e-68 261.2 200 67.5
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.6e-68 261.2 179 69.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 8.7e-68 260.8 179 70.9
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.5e-67 260.0 190 68.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.9e-67 259.6 179 69.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 3.3e-67 258.8 178 72.5
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 4.3e-67 258.5 193 68.4
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 7.3e-67 257.7 178 70.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 9.6e-67 257.3 180 68.3
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 9.6e-67 257.3 193 66.8
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-66 256.9 179 71.5
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 2.1e-66 256.1 193 66.8
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.8e-66 255.8 178 71.3
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.2e-66 254.6 184 69.6
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 8.1e-66 254.2 180 67.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.1e-65 253.8 190 67.4
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.4e-65 253.4 179 69.3
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.1e-65 252.3 174 73.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 5.3e-65 251.5 179 67.0
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.0e-64 249.6 184 68.5
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 2.0e-64 249.6 184 68.5
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.6e-64 249.2 186 65.1
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 5.8e-64 248.1 159 77.4
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 9.9e-64 247.3 180 68.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.3e-63 246.9 194 66.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-63 246.9 180 66.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.7e-63 246.5 180 68.9
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.7e-63 246.5 180 68.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.9e-63 245.0 192 64.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 8.4e-63 244.2 190 61.1
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 8.4e-63 244.2 194 60.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.1e-62 243.8 193 64.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-62 243.8 192 64.1
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.9e-62 243.0 181 66.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.9e-62 243.0 166 71.1
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.7e-61 239.2 166 69.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.5e-61 238.8 179 65.4
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.3e-60 236.9 165 72.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.3e-60 236.1 171 65.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.9e-60 235.3 189 64.6
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 5.1e-60 235.0 179 67.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.9e-59 233.0 267 49.8
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.5e-59 232.6 176 65.9
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 9.6e-59 230.7 171 68.4
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.6e-58 229.9 178 63.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.6e-58 228.8 166 69.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.8e-58 228.4 166 66.3
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.9e-54 216.5 156 69.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.9e-53 211.1 144 69.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.9e-53 211.1 122 81.1
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-51 206.8 146 69.2
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.3e-51 205.7 174 60.3
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 9.0e-49 197.6 177 59.9
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.4e-47 191.0 124 68.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-46 189.9 129 70.5
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.8e-44 183.3 203 52.2
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.8e-44 183.3 203 52.2
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.0e-44 182.6 109 78.9
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.7e-39 166.8 168 50.6
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 7.7e-32 141.4 173 45.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-29 133.3 120 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 3.8e-23 112.5 98 56.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.2e-21 107.5 104 55.8
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.8e-18 95.5 175 34.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.2e-15 86.7 64 65.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.2e-15 86.7 86 55.8
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 3.6e-13 79.3 48 64.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 5.3e-09 65.5 49 67.3


User provided reference genes

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