Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.4e-122 441.4 244 100.0
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.1e-95 352.8 204 95.1
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.3e-68 261.5 173 89.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 7.0e-67 258.1 212 69.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.0e-62 242.7 200 66.5
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 4.8e-60 235.3 208 62.5
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.8e-60 235.3 213 60.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.2e-60 234.6 157 74.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 8.2e-60 234.6 197 64.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.1e-59 232.3 208 62.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-58 230.3 212 59.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.9e-58 228.4 206 63.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.9e-58 228.4 207 62.8
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.0e-57 227.6 155 72.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.3e-57 227.3 155 73.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.3e-57 227.3 212 60.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.7e-57 226.9 211 60.7
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.2e-57 226.5 196 63.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.2e-57 226.5 211 60.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 5.0e-57 225.3 221 58.8
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.0e-57 225.3 202 61.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 6.5e-57 224.9 210 59.5
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.5e-56 223.8 214 61.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.9e-56 223.4 200 60.5
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.9e-56 223.4 199 60.3
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-56 223.4 222 59.5
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.5e-56 223.0 208 60.6
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.2e-56 222.2 209 60.8
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 7.2e-56 221.5 225 53.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 9.4e-56 221.1 200 64.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 9.4e-56 221.1 200 64.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-55 220.7 199 60.3
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-55 220.7 199 60.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.2e-55 220.7 199 60.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.2e-55 220.7 199 60.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-55 219.9 201 62.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-55 219.9 214 60.7
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-55 219.5 199 59.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.7e-55 219.5 199 58.8
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.7e-55 219.5 217 57.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.6e-55 219.2 212 60.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.7e-55 218.8 208 59.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 4.7e-55 218.8 200 63.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 6.1e-55 218.4 199 59.8
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.0e-55 218.0 190 63.2
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 8.0e-55 218.0 216 57.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.0e-54 217.6 218 59.6
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.0e-54 217.6 213 57.3
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.0e-54 217.6 208 60.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.4e-54 217.2 211 58.8
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.4e-54 217.2 214 59.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-54 217.2 171 66.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-54 216.9 199 60.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-54 216.9 199 61.3
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.8e-54 216.9 199 60.8
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.8e-54 216.9 199 61.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.0e-54 216.1 211 59.2
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.0e-54 216.1 212 58.5
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.0e-54 215.7 199 60.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.0e-54 215.7 215 59.5
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.2e-54 215.3 153 71.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.7e-54 214.9 146 74.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.7e-54 214.9 146 74.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 6.7e-54 214.9 208 60.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.2e-53 214.2 157 70.1
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.2e-53 214.2 157 69.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.5e-53 213.8 199 58.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-53 213.0 169 66.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.3e-53 212.6 158 69.6
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.4e-53 212.2 210 59.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.4e-53 212.2 211 59.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.7e-53 211.8 196 60.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-53 211.8 146 73.3
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.7e-53 211.8 157 70.1
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 7.5e-53 211.5 158 69.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 7.5e-53 211.5 157 69.4
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.2e-52 209.9 212 58.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.8e-52 209.5 197 58.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.8e-52 209.5 197 60.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.8e-52 208.8 211 59.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.3e-52 208.4 157 66.9
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.2e-52 208.0 171 64.3
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.1e-51 207.6 212 56.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-51 207.6 212 56.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-51 207.6 212 56.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.8e-51 206.8 154 66.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-51 206.8 207 58.5
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-51 206.5 212 56.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.4e-51 206.5 158 67.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-51 206.1 212 56.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 9.1e-51 204.5 210 57.6
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 9.1e-51 204.5 213 56.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.0e-50 203.4 219 57.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.5e-50 202.6 211 56.9
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.7e-49 200.3 227 53.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.2e-49 199.9 187 58.8
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.2e-49 199.9 183 60.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.9e-49 199.5 214 56.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.8e-49 199.1 155 65.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.1e-48 197.6 234 53.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.5e-48 197.2 206 58.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-48 196.4 198 57.1
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.2e-48 196.1 233 52.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.5e-48 195.3 214 53.7
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 5.5e-48 195.3 221 57.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 8.0e-47 191.4 280 42.5
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.0e-46 191.0 211 55.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.8e-46 188.0 221 52.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.6e-45 186.4 135 71.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 7.5e-45 184.9 215 52.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 8.3e-44 181.4 216 50.9
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.4e-43 180.6 238 48.3
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.4e-43 180.6 157 60.5
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.1e-43 179.1 102 86.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 7.0e-43 178.3 156 60.9
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.5e-42 176.0 196 54.1
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 5.9e-42 175.3 301 41.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.7e-41 173.7 215 51.6
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.6e-41 171.4 210 51.9
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 8.6e-41 171.4 132 65.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-40 170.2 227 46.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-40 170.2 227 46.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.3e-38 163.3 212 51.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 6.8e-38 161.8 137 58.4
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 8.9e-38 161.4 137 58.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.5e-37 160.6 158 56.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.4e-37 159.5 216 47.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 9.2e-35 151.4 93 76.3
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.0e-30 137.9 81 81.5
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.8e-30 137.1 141 48.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 4.0e-30 136.0 160 51.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 8.9e-30 134.8 134 49.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.5e-29 134.0 217 43.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.4e-29 132.5 201 39.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.4e-29 132.5 103 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.2e-28 130.2 103 56.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.9e-28 129.0 101 54.5
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.6e-25 118.6 80 72.5
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-24 115.9 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.3e-24 115.9 67 85.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 7.3e-24 115.2 86 64.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.3e-12 77.8 133 42.9
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-11 74.7 50 70.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.9e-11 73.9 72 56.9


User provided reference genes

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