Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.0e-179 633.3 310 100.0
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.0e-176 623.2 310 98.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.3e-171 606.3 310 95.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.7e-134 483.0 272 87.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 3.0e-123 445.7 312 71.2
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 6.7e-123 444.5 312 71.2
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 7.4e-122 441.0 250 82.4
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 3.1e-120 435.6 281 73.0
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.9e-120 434.5 265 77.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.3e-118 430.3 254 79.5
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 2.9e-118 429.1 262 77.1
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 8.4e-118 427.6 254 79.1
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.4e-117 426.0 314 70.1
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 7.1e-117 424.5 255 79.2
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 9.3e-117 424.1 266 75.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.6e-116 423.3 263 77.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 6.0e-116 421.4 254 76.4
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.0e-115 420.6 311 66.9
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.3e-115 419.5 312 67.9
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.1e-114 417.2 260 75.4
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 4.3e-114 415.2 262 73.3
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.6e-114 414.8 253 75.9
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 5.6e-114 414.8 253 75.9
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 9.6e-114 414.1 264 73.9
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 2.1e-113 412.9 253 75.5
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 6.2e-113 411.4 280 67.9
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 8.2e-113 411.0 232 81.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 8.2e-113 411.0 232 81.9
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 5.3e-112 408.3 294 65.3
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 9.0e-112 407.5 311 66.6
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.2e-111 407.1 276 71.0
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.2e-111 407.1 250 76.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 4.5e-111 405.2 253 75.1
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.8e-111 404.8 283 66.1
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 5.8e-111 404.8 274 71.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.0e-110 404.1 261 71.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-110 404.1 255 75.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-110 404.1 255 75.7
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 1.0e-110 404.1 246 75.6
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.3e-110 403.7 255 72.5
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.7e-110 403.3 252 74.2
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.2e-110 402.9 294 64.6
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.9e-110 402.5 248 73.4
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.9e-110 402.5 255 72.5
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.9e-110 401.7 294 64.3
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.1e-109 400.6 248 73.8
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.1e-109 400.6 248 73.8
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.1e-109 400.6 248 73.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.1e-109 400.6 246 74.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.1e-109 400.6 316 63.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 1.9e-109 399.8 296 66.6
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 5.5e-109 398.3 248 72.6
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 9.3e-109 397.5 310 63.9
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.7e-108 396.0 311 64.3
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 6.0e-108 394.8 253 73.9
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 7.9e-108 394.4 246 74.8
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.0e-107 394.0 246 72.8
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.0e-107 392.5 245 73.1
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 3.0e-107 392.5 247 73.7
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 6.7e-107 391.3 248 71.4
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.7e-107 391.3 269 68.8
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.5e-106 390.2 261 72.4
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.9e-106 389.8 312 62.8
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 5.7e-106 388.3 279 65.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 9.7e-106 387.5 334 59.3
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 2.2e-105 386.3 255 72.5
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.8e-105 386.0 248 71.0
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 8.2e-105 384.4 314 59.9
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.8e-104 383.3 247 72.9
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 4.1e-104 382.1 232 75.4
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.9e-104 381.3 245 72.7
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 3.8e-102 375.6 284 65.8
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 8.5e-102 374.4 248 71.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.9e-101 373.2 248 71.8
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 7.9e-100 367.9 289 63.0
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 7.9e-100 367.9 278 62.9
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.9e-100 367.9 230 75.7
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.8e-99 366.7 263 68.1
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 5.1e-99 365.2 230 74.3
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 8.7e-99 364.4 254 65.7
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.1e-98 364.0 257 67.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.1e-96 357.5 265 67.5
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 3.1e-96 355.9 251 64.9
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.1e-96 355.5 211 77.7
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 9.1e-96 354.4 242 66.5
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.0e-95 353.2 246 67.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 3.4e-95 352.4 211 77.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.2e-94 349.7 256 64.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 7.9e-92 341.3 252 63.5
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 6.9e-88 328.2 246 64.2
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.6e-84 315.8 247 63.6
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.7e-81 307.0 243 60.9
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.1e-77 294.3 287 54.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 3.6e-76 289.3 298 52.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 4.7e-76 288.9 250 60.8
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 4.0e-75 285.8 263 56.3
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 5.7e-74 282.0 288 51.0
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 3.2e-69 266.2 151 79.5
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 7.2e-69 265.0 207 60.9
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.7e-68 263.1 177 72.9
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.0e-67 259.6 204 60.3
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.0e-67 259.6 168 68.5
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.3e-54 217.6 171 60.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.5e-50 204.1 269 40.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 7.0e-48 195.3 248 42.7
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.3e-41 174.5 168 53.0
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 6.4e-41 172.2 197 45.7
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.2e-36 157.9 128 59.4
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.6e-34 150.2 122 61.5
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.4e-32 143.7 99 68.7
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 7.1e-32 142.1 115 59.1
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.7e-31 140.2 94 73.4
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.5e-29 134.4 111 55.9
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.9e-29 134.0 98 65.3
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 4.4e-26 122.9 150 42.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 6.4e-25 119.0 178 38.8
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-24 118.2 125 49.6
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 3.2e-24 116.7 119 51.3
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-20 104.4 149 40.3
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 4.7e-20 102.8 58 79.3
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 4.7e-20 102.8 65 70.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-19 100.5 140 42.9
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-17 94.4 202 33.7
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-11 75.1 116 39.7
Lsat_1_v5_gn_0_18220 Lactuca sativa HOM05D001287 ORTHO05D001226 4.0e-11 73.2 236 26.7
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-10 71.6 116 37.1
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 1.5e-10 71.2 228 26.3
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.6e-10 70.5 56 53.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 9.9e-10 68.6 120 33.3
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 3.8e-09 66.6 95 40.0
Gohir.A05G354300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.9e-08 64.3 204 28.4
Gorai.012G065500 Gossypium raimondii HOM05D001287 ORTHO05D001226 1.9e-08 64.3 204 28.4
DCAR_015065 Daucus carota HOM05D001287 ORTHO05D001226 3.2e-08 63.5 206 28.6
COL.COLO4_29186 Corchorus olitorius HOM05D001287 ORTHO05D001941 5.4e-08 62.8 201 27.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 5.4e-08 62.8 53 52.8
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 5.4e-08 62.8 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 5.4e-08 62.8 41 65.9
Migut.H00023 Erythranthe guttata HOM05D001287 ORTHO05D001226 7.1e-08 62.4 207 26.6
AT3G27440 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 2.1e-07 60.8 205 26.3
Carub.0005s0585 Capsella rubella HOM05D001287 ORTHO05D001226 2.7e-07 60.5 214 27.1
CARHR148810 Cardamine hirsuta HOM05D001287 ORTHO05D001226 3.5e-07 60.1 204 27.5
Duzib147G0250 Durio zibethinus HOM05D001287 ORTHO05D001226 4.6e-07 59.7 202 27.2
Thhalv10005624m.g Eutrema salsugineum HOM05D001287 ORTHO05D001226 4.6e-07 59.7 205 25.9
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 4.6e-07 59.7 71 50.7
Aa31LG2G5180 Aethionema arabicum HOM05D001287 ORTHO05D001226 6.0e-07 59.3 234 25.2
AL5G16850 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 6.0e-07 59.3 204 25.5
Sp2g16640 Schrenkiella parvula HOM05D001287 ORTHO05D001226 6.0e-07 59.3 204 26.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 1.0e-06 58.5 49 57.1
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.8e-06 57.8 60 48.3
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 1.8e-06 57.8 50 58.0
BcaB04g19439 Brassica carinata HOM05D001287 ORTHO05D001226 2.3e-06 57.4 204 26.0
BcaC04g23902 Brassica carinata HOM05D001287 ORTHO05D001226 2.3e-06 57.4 204 26.0
C09p03630 Brassica napus HOM05D001287 ORTHO05D001226 2.3e-06 57.4 204 26.0
BolC9t53282H Brassica oleracea HOM05D001287 ORTHO05D001226 2.3e-06 57.4 204 26.0
BraA09t35980Z Brassica rapa HOM05D001287 ORTHO05D001226 2.3e-06 57.4 204 27.0
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 5.1e-06 56.2 50 56.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 6.7e-06 55.8 53 49.1
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 8.7e-06 55.5 212 24.5


User provided reference genes

Program Settings