Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.2e-77 290.4 159 100.0
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.0e-71 273.5 162 95.1
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.7e-62 241.1 159 81.8
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 4.1e-36 155.2 155 58.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.6e-35 153.3 155 57.4
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.6e-35 153.3 155 57.4
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.8e-35 151.0 155 56.8
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 7.8e-35 151.0 151 60.9
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 8.6e-34 147.5 148 62.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.1e-33 147.1 148 63.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.1e-33 147.1 159 56.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.9e-33 146.4 148 62.2
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.6e-32 143.3 169 55.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 8.1e-32 141.0 146 57.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.3e-31 139.4 179 52.5
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.2e-31 138.3 155 54.2
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.2e-31 138.3 145 57.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.2e-31 138.3 162 52.5
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 6.8e-31 137.9 156 53.8
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 8.9e-31 137.5 151 57.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.5e-30 136.7 143 58.0
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.0e-30 136.3 145 57.9
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 4.4e-30 135.2 148 54.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.7e-29 133.3 160 52.5
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 3.7e-29 132.1 161 54.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 8.4e-29 131.0 144 60.4
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.9e-28 129.8 153 51.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.4e-28 129.4 153 52.9
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.2e-27 127.1 152 58.6
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.1e-27 126.3 170 57.1
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.5e-27 125.6 150 55.3
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 7.8e-27 124.4 139 53.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.3e-26 123.6 170 51.2
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.7e-26 123.2 156 48.7
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.7e-26 123.2 171 50.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.7e-26 123.2 145 55.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.0e-26 122.5 154 51.9
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.9e-26 122.1 156 49.4
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.9e-26 122.1 174 47.7
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.9e-26 122.1 164 48.8
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 5.1e-26 121.7 174 47.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.1e-26 121.7 163 50.3
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.1e-26 121.7 163 50.3
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.1e-26 121.7 141 51.8
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.1e-26 121.7 141 51.8
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 6.6e-26 121.3 189 46.0
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 6.6e-26 121.3 182 44.5
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 8.6e-26 120.9 180 46.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.6e-26 120.9 153 50.3
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 8.6e-26 120.9 148 49.3
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-25 120.6 148 50.7
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.1e-25 120.6 154 48.7
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.5e-25 120.2 179 45.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.5e-25 120.2 179 45.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-25 120.2 158 52.5
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.5e-25 120.2 133 57.1
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.9e-25 119.8 160 53.1
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.5e-25 119.4 180 51.7
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.5e-25 119.4 152 49.3
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.3e-25 118.6 148 50.7
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 4.3e-25 118.6 148 50.7
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 7.3e-25 117.9 162 49.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 9.6e-25 117.5 182 49.5
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.2e-24 117.1 151 48.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.6e-24 116.7 149 50.3
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 3.6e-24 115.5 161 53.4
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 3.6e-24 115.5 161 53.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 3.6e-24 115.5 152 49.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 3.6e-24 115.5 153 45.1
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.7e-24 115.2 147 50.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 6.2e-24 114.8 146 55.5
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.1e-23 114.0 179 50.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.1e-23 114.0 157 51.6
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.8e-23 113.2 176 50.0
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.4e-23 112.8 178 49.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.0e-23 112.1 166 48.2
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 5.2e-23 111.7 154 55.8
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 8.9e-23 110.9 155 47.1
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.5e-22 110.2 166 45.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.5e-22 110.2 185 47.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.0e-22 109.8 175 42.3
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.6e-22 109.4 160 53.8
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 3.4e-22 109.0 172 41.3
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 4.4e-22 108.6 148 49.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 4.4e-22 108.6 181 44.8
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.6e-22 107.8 169 49.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 7.6e-22 107.8 173 46.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 7.6e-22 107.8 149 47.7
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.9e-21 105.9 139 46.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 8.4e-21 104.4 171 46.8
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.1e-20 104.0 158 44.3
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.4e-20 103.6 168 47.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.4e-20 103.6 176 41.5
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.9e-20 103.2 174 42.5
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.9e-20 103.2 190 41.6
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 5.4e-20 101.7 151 47.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 7.1e-20 101.3 156 45.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.1e-20 101.3 166 45.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 9.3e-20 100.9 148 47.3
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 9.3e-20 100.9 167 41.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.7e-19 99.4 151 43.7
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.3e-18 97.1 157 43.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.7e-18 96.7 148 45.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.3e-18 96.3 147 44.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 5.1e-18 95.1 146 48.6
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 5.1e-18 95.1 146 48.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 5.1e-18 95.1 165 43.6
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 8.7e-18 94.4 147 48.3
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-17 94.0 135 51.1
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.1e-17 94.0 137 43.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.5e-17 93.6 152 47.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-17 93.2 147 47.6
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.9e-17 93.2 170 42.4
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.5e-17 92.8 134 49.3
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 4.3e-17 92.0 145 46.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.3e-17 92.0 147 42.2
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.3e-17 92.0 145 45.5
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.8e-16 89.4 143 44.8
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 4.8e-16 88.6 144 41.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.4e-15 86.3 155 43.2
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 4.0e-15 85.5 173 40.5
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 9.0e-15 84.3 90 63.3
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.4e-12 76.3 92 47.8
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.2e-12 75.9 90 55.6
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.2e-12 75.9 90 55.6
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.2e-12 75.9 90 55.6
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 3.2e-12 75.9 127 42.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 7.1e-12 74.7 118 44.1
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 7.1e-12 74.7 128 45.3
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.7e-11 72.8 126 37.3
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.7e-11 72.8 118 43.2
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.1e-09 67.4 85 52.9
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.5e-09 67.0 49 65.3
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.3e-09 65.9 89 46.1
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 5.6e-09 65.1 112 43.8
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 7.3e-09 64.7 112 43.8
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.3e-08 63.9 80 57.5
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 3.6e-08 62.4 38 73.7
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 4.0e-07 58.9 41 65.9
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 4.0e-07 58.9 70 51.4
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 9.0e-07 57.8 107 37.4
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.0e-07 57.8 93 38.7
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 9.0e-07 57.8 93 38.7
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.2e-06 57.4 38 68.4
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-06 56.2 93 38.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-06 55.8 123 37.4
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-06 55.8 129 38.0
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.4e-06 55.8 129 38.0
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 9.9e-06 54.3 135 35.6


User provided reference genes

Program Settings