Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.9e-204 715.7 372 100.0
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 3.7e-197 691.4 372 96.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.6e-163 579.7 373 83.1
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.6e-155 553.1 376 79.8
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 6.3e-128 461.5 375 66.9
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.5e-124 449.5 375 65.6
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.5e-124 448.4 380 63.9
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.2e-124 448.0 373 65.7
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.2e-123 447.2 376 65.4
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.0e-122 444.1 376 65.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 1.8e-122 443.4 375 64.0
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.2e-121 440.7 370 64.9
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.0e-121 439.9 370 64.9
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 2.0e-121 439.9 381 63.5
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.6e-121 439.5 372 64.8
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 3.4e-121 439.1 375 64.0
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 1.7e-120 436.8 374 64.2
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.7e-120 436.8 376 64.4
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 2.2e-120 436.4 380 65.0
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 2.2e-120 436.4 374 64.7
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 2.8e-120 436.0 379 65.7
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.8e-120 436.0 375 63.5
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.1e-119 434.1 412 60.4
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 3.1e-119 432.6 380 63.7
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.2e-118 430.6 369 64.2
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 7.7e-118 427.9 375 63.5
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 6.5e-117 424.9 371 63.9
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.5e-116 423.7 377 61.8
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.9e-116 423.3 376 62.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.2e-116 421.4 374 63.1
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.2e-115 420.6 368 62.8
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 2.1e-115 419.9 374 62.0
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.7e-115 418.7 374 61.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.1e-115 418.3 375 63.5
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.0e-115 417.9 376 61.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.0e-115 417.9 374 61.5
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.0e-114 417.5 379 61.7
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.8e-114 416.8 375 61.9
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.2e-114 415.2 395 58.2
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 6.8e-114 414.8 379 63.1
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 1.2e-113 414.1 371 62.8
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 7.5e-113 411.4 415 56.6
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 1.7e-112 410.2 370 61.1
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 4.9e-112 408.7 368 60.1
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 8.3e-112 407.9 371 62.0
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 8.3e-112 407.9 411 56.7
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 1.4e-111 407.1 370 58.9
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 4.1e-111 405.6 373 61.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.4e-111 405.2 373 59.8
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 7.0e-111 404.8 377 60.2
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 7.0e-111 404.8 374 58.3
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 4.5e-110 402.1 371 60.9
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 5.9e-110 401.7 366 58.7
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 7.8e-110 401.4 371 59.0
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 7.8e-110 401.4 376 61.4
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.7e-109 400.2 378 61.6
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.9e-109 399.4 380 58.9
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.3e-108 396.0 366 57.4
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 4.3e-108 395.6 382 58.1
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.6e-108 395.2 373 60.6
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 9.5e-108 394.4 411 56.7
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.2e-107 394.0 375 59.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.6e-107 393.7 381 58.8
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 3.6e-107 392.5 380 59.5
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.8e-106 390.2 379 58.3
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.3e-106 389.8 371 59.0
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 4.4e-105 385.6 358 60.6
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.7e-104 383.6 372 58.1
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.9e-104 382.9 378 55.8
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 4.6e-102 375.6 376 58.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 5.9e-102 375.2 374 58.3
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.3e-101 373.2 395 54.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 5.0e-101 372.1 397 55.2
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 5.0e-101 372.1 371 55.8
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.6e-99 367.1 370 57.0
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.1e-99 366.7 376 55.9
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.1e-99 366.7 375 57.1
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 6.2e-99 365.2 402 53.7
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.3e-98 363.2 417 52.0
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 3.1e-98 362.8 401 54.1
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 4.0e-98 362.5 411 51.1
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 5.2e-98 362.1 374 58.0
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 6.8e-98 361.7 401 53.9
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.5e-97 360.5 381 53.3
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 3.4e-97 359.4 404 52.2
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 5.8e-97 358.6 418 51.4
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 9.8e-97 357.8 401 53.1
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.7e-96 357.1 403 52.4
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 2.9e-96 356.3 419 52.5
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 6.4e-96 355.1 401 53.6
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 8.3e-96 354.8 405 52.8
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.4e-95 353.2 409 51.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 3.2e-95 352.8 394 51.5
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.0e-94 350.1 392 51.5
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 6.0e-94 348.6 354 54.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.0e-93 347.8 393 52.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 3.0e-93 346.3 407 52.1
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.9e-93 345.9 424 51.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.1e-92 344.4 409 52.1
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.9e-92 343.6 390 51.5
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 3.3e-92 342.8 420 50.5
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-91 340.9 407 52.3
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.2e-91 340.9 412 52.4
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 3.1e-90 336.3 386 51.0
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.5e-89 334.0 370 52.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-88 330.9 362 54.7
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 7.1e-87 325.1 370 53.0
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 3.5e-86 322.8 323 55.1
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 5.6e-84 315.5 369 51.8
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 7.8e-78 295.0 428 43.0
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.1e-76 291.2 333 52.3
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.5e-73 280.8 284 57.7
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 3.8e-56 223.0 407 38.1
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.8e-53 214.2 292 47.3
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.9e-53 213.0 479 36.1
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.4e-50 204.5 363 37.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 1.7e-48 197.6 219 52.5
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 1.7e-48 197.6 219 52.5
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 1.7e-48 197.6 219 52.5
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.0e-45 186.8 292 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 8.7e-45 185.3 532 31.6
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.1e-42 176.4 142 66.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.3e-42 176.0 373 40.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 2.3e-37 160.6 143 62.9
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.8e-35 153.7 400 32.5
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 2.6e-33 147.1 172 50.6
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.6e-33 147.1 142 58.5
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.0e-29 133.7 210 43.8
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 2.0e-25 120.9 317 34.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.3e-24 118.2 189 39.2
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 4.4e-20 103.2 135 47.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.3e-16 91.7 377 27.1
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.3e-16 91.7 377 27.1
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.2e-15 85.9 108 47.2
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 4.4e-12 76.6 45 80.0
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 3.2e-07 60.5 77 42.9


User provided reference genes

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