Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.6e-183 644.4 329 100.0
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.0e-157 559.3 332 85.8
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 3.2e-152 542.0 374 78.1
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.5e-141 506.5 281 92.2
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 7.8e-130 467.6 283 84.8
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 9.0e-110 401.0 329 64.7
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.4e-107 393.7 330 64.2
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.4e-107 393.7 332 64.2
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.4e-107 391.7 330 63.0
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 5.4e-107 391.7 347 60.8
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.8e-106 387.9 330 62.4
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 7.8e-106 387.9 324 63.3
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.3e-105 386.3 328 64.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.0e-105 386.0 381 56.7
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.1e-105 385.2 330 62.7
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 8.7e-105 384.4 329 62.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.5e-104 383.6 334 63.8
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.1e-103 377.9 331 61.6
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.0e-102 375.6 324 63.3
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.0e-102 375.6 330 62.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.0e-101 373.2 428 51.9
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 2.6e-101 372.9 336 61.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 4.5e-101 372.1 341 61.6
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.3e-100 370.5 333 60.7
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 3.8e-100 369.0 327 62.4
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.1e-99 367.5 340 60.9
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.9e-99 366.7 349 59.9
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 7.1e-99 364.8 440 50.9
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 9.3e-99 364.4 382 55.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.3e-97 360.5 331 61.3
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.3e-97 360.5 373 56.3
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.8e-97 360.1 330 60.6
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.8e-97 360.1 345 59.4
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 3.9e-97 359.0 426 50.7
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 4.3e-96 355.5 418 50.2
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 9.6e-96 354.4 330 59.4
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 4.8e-95 352.1 391 52.4
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.1e-94 349.4 438 49.5
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.1e-94 349.4 438 49.5
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.1e-94 349.4 338 58.0
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.0e-94 349.0 429 49.9
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 4.0e-94 349.0 425 50.6
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 6.9e-94 348.2 337 59.1
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 2.0e-93 346.7 433 50.3
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 3.4e-93 345.9 329 56.5
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 4.5e-93 345.5 375 53.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 4.5e-93 345.5 402 50.5
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 4.5e-93 345.5 325 57.8
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.8e-93 345.1 438 48.9
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 5.8e-93 345.1 344 58.1
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.2e-92 343.2 447 47.9
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.9e-92 342.8 440 47.3
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 4.9e-92 342.0 488 45.5
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 2.4e-91 339.7 488 45.3
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.2e-91 339.3 416 49.5
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 9.3e-91 337.8 331 56.5
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.2e-90 337.4 458 46.5
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.2e-90 337.4 501 45.7
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 4.6e-90 335.5 457 47.0
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.1e-88 330.9 497 44.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 3.3e-88 329.3 289 60.6
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.3e-87 327.4 467 43.7
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 2.8e-87 326.2 475 43.4
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 3.7e-87 325.9 496 41.9
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.8e-87 325.5 476 43.5
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 8.2e-87 324.7 466 44.8
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.4e-86 323.2 475 43.2
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.4e-86 323.2 424 49.3
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-86 322.8 485 42.3
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.1e-83 314.3 433 45.7
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.6e-82 310.5 440 45.0
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.6e-82 310.5 458 44.5
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 1.3e-81 307.4 473 42.5
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.1e-80 304.3 447 44.3
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.3e-80 302.4 392 47.4
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 7.4e-80 301.6 486 41.8
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 7.4e-80 301.6 402 48.0
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 1.4e-78 297.4 314 53.8
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.4e-78 297.4 427 46.4
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.2e-77 294.3 331 52.3
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 7.6e-77 291.6 257 60.7
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.8e-76 289.3 357 50.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.4e-75 287.3 473 41.6
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 5.5e-75 285.4 366 48.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 5.5e-75 285.4 388 47.2
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 5.5e-75 285.4 366 48.6
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 4.6e-74 282.3 465 40.2
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.1e-74 282.0 329 52.0
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.3e-72 276.2 386 45.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 7.4e-72 275.0 407 45.0
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.2e-71 273.5 386 45.6
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 3.7e-71 272.7 396 45.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 4.8e-71 272.3 402 43.3
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 4.1e-70 269.2 306 52.9
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 6.9e-70 268.5 321 50.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 1.5e-69 267.3 437 42.3
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 3.4e-69 266.2 420 43.1
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 9.4e-67 258.1 432 41.2
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.2e-66 257.7 387 43.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 6.7e-65 251.9 430 41.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 8.8e-65 251.5 417 42.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.3e-64 249.6 419 41.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 7.4e-64 248.4 376 44.7
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 2.8e-63 246.5 396 43.4
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 3.7e-63 246.1 379 43.5
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.2e-61 241.1 482 37.3
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.0e-61 240.4 482 36.5
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.0e-61 240.4 482 36.5
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.0e-60 238.0 430 40.2
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 6.5e-60 235.3 566 33.7
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.4e-59 234.2 458 37.8
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 3.2e-59 233.0 311 47.3
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.2e-58 231.1 571 33.1
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.6e-58 230.7 321 45.5
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 2.7e-58 229.9 378 42.1
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.4e-57 227.6 435 38.2
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.6e-53 214.2 351 42.5
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 2.9e-52 209.9 323 43.0
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.5e-51 207.6 141 75.9
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.1e-50 203.8 315 43.8
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.7e-47 193.0 147 70.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.8e-47 192.6 149 68.5
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.2e-43 179.5 319 42.3
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.7e-39 167.5 184 52.7
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.1e-38 162.9 420 32.1
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 4.5e-29 132.9 112 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 2.1e-26 124.0 348 28.7
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 2.1e-26 124.0 144 49.3
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 4.7e-26 122.9 74 79.7
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 6.4e-23 112.5 76 69.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.2e-16 91.7 98 53.1
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.3e-15 88.2 72 61.1
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.1e-13 80.9 78 46.2


User provided reference genes

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