Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 4.6e-236 820.8 415 100.0
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 8.8e-147 524.2 415 70.8
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.5e-133 480.3 411 65.0
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.7e-126 456.8 432 61.6
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 9.3e-104 381.3 376 56.4
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 7.8e-103 378.3 415 54.0
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.3e-102 376.7 383 53.8
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.9e-102 375.9 369 56.1
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.1e-100 370.2 411 52.3
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.8e-100 369.8 370 55.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.6e-100 369.4 392 52.8
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 4.8e-100 369.0 375 56.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 4.8e-100 369.0 393 54.2
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 6.2e-100 368.6 418 52.2
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 8.1e-100 368.2 413 52.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-99 367.9 385 53.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.8e-99 367.1 399 53.6
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.4e-99 366.7 386 54.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 2.4e-99 366.7 414 52.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 2.4e-99 366.7 414 52.2
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.4e-99 366.7 397 51.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.0e-99 365.9 362 56.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 4.0e-99 365.9 393 53.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 9.0e-99 364.8 371 55.0
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.5e-98 364.0 381 53.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.0e-98 363.6 392 53.6
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 3.4e-98 362.8 371 54.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 5.8e-98 362.1 395 53.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.3e-97 360.9 376 53.2
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 2.2e-97 360.1 388 52.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.9e-97 359.8 374 53.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.9e-97 359.8 408 53.2
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.9e-97 359.8 377 53.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.8e-97 359.4 375 53.3
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.9e-97 359.0 378 52.6
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 4.9e-97 359.0 405 52.6
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 6.4e-97 358.6 388 52.3
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.9e-96 357.1 378 52.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.4e-96 356.7 376 52.4
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 3.2e-96 356.3 370 53.5
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 3.2e-96 356.3 401 51.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.2e-96 356.3 390 53.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.2e-96 355.9 415 49.6
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.4e-96 355.5 374 52.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 7.1e-96 355.1 378 51.1
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 9.3e-96 354.8 373 52.3
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.2e-95 354.4 397 50.4
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.1e-95 353.6 370 53.8
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.1e-95 353.6 413 50.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.5e-95 352.8 417 49.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.6e-95 352.4 415 49.2
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.0e-94 351.3 411 49.6
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.3e-94 350.9 373 51.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.3e-94 350.9 370 52.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 8.7e-94 348.2 372 51.6
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.5e-93 347.4 413 50.4
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.5e-93 346.7 413 50.1
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.5e-93 346.7 378 52.6
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.3e-93 346.3 368 52.4
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.3e-93 345.9 384 51.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 9.6e-93 344.7 413 50.1
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 8.1e-92 341.7 406 48.3
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.4e-91 340.9 376 51.6
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 4.0e-91 339.3 373 51.2
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 7.6e-90 335.1 368 50.3
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 9.9e-90 334.7 405 50.6
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.9e-89 333.2 376 49.7
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.8e-89 332.8 378 51.3
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 4.9e-89 332.4 409 49.4
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-88 331.3 342 55.0
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.4e-88 330.1 420 49.5
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.4e-88 330.1 370 51.1
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.2e-88 329.7 421 49.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 4.2e-88 329.3 351 50.1
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 7.1e-88 328.6 374 49.5
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.3e-88 328.2 376 50.0
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.3e-88 328.2 376 50.0
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-87 327.8 422 45.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.6e-87 327.4 402 48.5
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.6e-87 327.4 403 47.1
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.1e-87 327.0 390 49.2
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 6.0e-87 325.5 461 46.6
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 7.9e-87 325.1 336 54.2
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.0e-86 324.7 335 55.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.9e-85 320.5 335 54.3
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 7.4e-85 318.5 392 47.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 9.6e-85 318.2 431 44.8
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.3e-84 317.8 336 55.4
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.3e-84 317.8 338 53.3
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.8e-84 316.6 419 46.1
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.4e-83 313.5 351 48.7
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.4e-83 313.5 413 45.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 5.3e-83 312.4 351 49.6
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.5e-82 309.3 337 51.9
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.9e-81 306.6 398 45.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.1e-75 288.1 371 45.8
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.0e-73 281.6 359 44.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.4e-72 277.7 354 44.4
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.1e-71 272.3 354 46.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-70 270.8 341 48.1
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.8e-70 270.8 230 65.2
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.0e-70 270.0 298 51.7
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 8.7e-70 268.5 357 42.9
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 8.7e-70 268.5 233 59.2
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 6.3e-68 262.3 210 67.1
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 2.4e-67 260.4 218 64.7
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.3e-65 254.6 189 66.7
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.7e-63 246.9 184 67.4
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.8e-62 244.2 213 62.9
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-61 238.8 167 72.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.7e-60 237.7 206 63.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 5.3e-59 232.6 303 43.9
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.1e-51 208.4 140 76.4
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 4.5e-50 203.0 209 52.2
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.1e-43 178.7 173 58.4
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-42 177.9 167 60.5
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-42 177.2 166 60.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-42 176.4 173 58.4
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-41 174.1 183 55.7
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-41 174.1 167 60.5
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-40 171.8 167 58.7
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.9e-40 171.0 281 40.9
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-40 169.1 166 58.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-39 167.9 168 57.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 6.1e-39 166.0 276 40.2
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-38 164.9 187 56.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-35 154.5 154 58.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-35 154.1 167 55.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-34 151.0 330 34.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.2e-32 143.3 216 38.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.8e-31 140.6 105 70.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-31 139.8 170 51.8
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-31 139.8 170 51.8
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.1e-31 139.4 107 70.1
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-30 137.5 111 69.4
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 8.8e-30 135.6 104 69.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-29 133.3 135 57.8
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-29 133.3 133 58.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 4.4e-29 133.3 106 67.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.6e-25 119.0 74 75.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-21 108.6 166 44.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 5.7e-21 106.3 119 53.8
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.9e-20 104.0 432 27.8
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-18 96.3 80 67.5
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.6e-17 92.4 143 41.3
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-16 91.7 56 76.8
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.9e-16 91.3 182 33.5
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-16 90.1 93 55.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.6e-15 88.2 57 73.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-10 72.0 99 46.5
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 6.0e-10 69.7 120 35.0
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 9.5e-08 62.4 91 40.7


User provided reference genes

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