Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005535.2 Cucumis melo HOM05D007031 ORTHO05D008815 7.0e-68 260.4 122 100.0
ClCG01G004020 Citrullus lanatus HOM05D007031 ORTHO05D008815 1.8e-63 245.7 122 95.9
CsaV3_5G004200 Cucumis sativus L. HOM05D007031 ORTHO05D008815 7.0e-52 207.2 101 97.0
Sed0003740 Sechium edule HOM05D007031 ORTHO05D008815 1.6e-48 196.1 101 94.1
QL12p012249 Quercus lobata HOM05D007031 ORTHO05D008815 2.5e-41 172.2 102 77.5
BolC1t02559H Brassica oleracea HOM05D007031 ORTHO05D008815 3.3e-41 171.8 101 79.2
CSS0002961 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 9.5e-41 170.2 101 77.2
RcHm_v2.0_Chr7g0203161 Rosa chinensis HOM05D007031 ORTHO05D008815 9.5e-41 170.2 105 77.1
CSS0040909 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.2e-40 169.9 101 77.2
BraA01t02001Z Brassica rapa HOM05D007031 ORTHO05D008815 1.6e-40 169.5 101 78.2
Cfa012711 Carpinus fangiana HOM05D007031 ORTHO05D008815 8.1e-40 167.2 105 73.3
BcaC09g50373 Brassica carinata HOM05D007031 ORTHO05D008815 1.4e-39 166.4 101 78.2
CiPaw.12G109600 Carya illinoinensis HOM05D007031 ORTHO05D008815 2.3e-39 165.6 112 69.6
CANSAT21G0077 Cannabis sativa HOM05D007031 ORTHO05D008815 3.1e-39 165.2 100 73.0
FvH4_5g18810 Fragaria vesca HOM05D007031 ORTHO05D008815 3.1e-39 165.2 101 76.2
FAN13G0327 Fragaria x ananassa HOM05D007031 ORTHO05D008815 3.1e-39 165.2 101 76.2
FAN18G3883 Fragaria x ananassa HOM05D007031 ORTHO05D008815 3.1e-39 165.2 101 76.2
BcaNung00171 Brassica carinata HOM05D007031 ORTHO05D008815 4.0e-39 164.9 101 78.2
FAN08G1843 Fragaria x ananassa HOM05D007031 ORTHO05D008815 5.2e-39 164.5 101 75.2
THA.LOC104815489 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 1.2e-38 163.3 101 76.2
TPR.G25905 Trifolium pratense HOM05D007031 ORTHO05D008815 2.0e-38 162.5 102 73.5
Peaxi162Scf00102g01143 Petunia axillaris HOM05D007031 ORTHO05D008815 2.6e-38 162.2 103 77.7
Carub.0007s2484 Capsella rubella HOM05D007031 ORTHO05D008815 3.4e-38 161.8 101 76.2
Aa31LG2G12690 Aethionema arabicum HOM05D007031 ORTHO05D008815 4.4e-38 161.4 101 74.3
AT4G16566 Arabidopsis thaliana HOM05D007031 ORTHO05D008815 4.4e-38 161.4 101 76.2
AL7G38210 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 7.6e-38 160.6 101 76.2
CARHR223050 Cardamine hirsuta HOM05D007031 ORTHO05D008815 9.9e-38 160.2 105 72.4
Solyc08g007380.4 Solanum lycopersicum HOM05D007031 ORTHO05D008815 9.9e-38 160.2 102 73.5
Sopen08g003330 Solanum pennellii HOM05D007031 ORTHO05D008815 9.9e-38 160.2 102 73.5
Dinv21635 Davidia involucrata HOM05D007031 ORTHO05D008815 1.7e-37 159.5 102 75.5
Lj2g0002187 Lotus japonicus HOM05D007031 ORTHO05D008815 1.7e-37 159.5 101 72.3
vmacro16391 Vaccinium macrocarpon HOM05D007031 ORTHO05D008815 1.7e-37 159.5 101 74.3
Glyma.11G032300 Glycine max HOM05D007031 ORTHO05D008815 2.2e-37 159.1 101 72.3
Hund14533 Selenicereus undatus HOM05D007031 ORTHO05D008815 2.9e-37 158.7 101 74.3
Atru.chr9.1322 Acer truncatum HOM05D007031 ORTHO05D008815 4.9e-37 157.9 102 74.5
Thhalv10026497m.g Eutrema salsugineum HOM05D007031 ORTHO05D008815 4.9e-37 157.9 101 74.3
MSTRG.13772 Avicennia marina HOM05D007031 ORTHO05D008815 6.4e-37 157.5 102 75.5
Ciclev10022693m.g Citrus clementina HOM05D007031 ORTHO05D008815 6.4e-37 157.5 102 76.5
TAR636G3191 Trochodendron aralioides HOM05D007031 ORTHO05D008815 6.4e-37 157.5 102 75.5
Lalb_Chr09g0324411 Lupinus albus HOM05D007031 ORTHO05D008815 8.3e-37 157.1 101 72.3
AL7G38260 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 1.1e-36 156.8 101 74.3
arahy.Tifrunner.gnm1.ann1.R85P7C Arachis hypogaea HOM05D007031 ORTHO05D008815 1.1e-36 156.8 102 70.6
Duzib205G0920 Durio zibethinus HOM05D007031 ORTHO05D008815 1.1e-36 156.8 102 74.5
Cc08_g12500 Coffea canephora HOM05D007031 ORTHO05D008815 1.4e-36 156.4 102 74.5
Potri.003G076400 Populus trichocarpa HOM05D007031 ORTHO05D008815 1.4e-36 156.4 101 74.3
arahy.Tifrunner.gnm1.ann1.WL6NYT Arachis hypogaea HOM05D007031 ORTHO05D008815 1.9e-36 156.0 102 70.6
Phvul.002G062701 Phaseolus vulgaris HOM05D007031 ORTHO05D008815 1.9e-36 156.0 101 71.3
Gohir.D08G188900 Gossypium hirsutum HOM05D007031 ORTHO05D008815 2.4e-36 155.6 102 72.5
Gorai.004G199000 Gossypium raimondii HOM05D007031 ORTHO05D008815 2.4e-36 155.6 102 72.5
Hma1.2p1_0316F.1_g123210 Hydrangea macrophylla HOM05D007031 ORTHO05D008815 4.1e-36 154.8 102 73.5
CAN.G1227.14 Capsicum annuum HOM05D007031 ORTHO05D008815 7.1e-36 154.1 102 71.6
Psat2g177560 Pisum sativum HOM05D007031 ORTHO05D008815 7.1e-36 154.1 101 72.3
TWI60G0154 Tripterygium wilfordii HOM05D007031 ORTHO05D008815 1.6e-35 152.9 102 72.5
MBI04_g09491_MAGBIO Magnolia biondii HOM05D007031 ORTHO05D008815 2.1e-35 152.5 102 72.5
FAN14G5160 Fragaria x ananassa HOM05D007031 ORTHO05D008815 3.5e-35 151.8 122 59.0
Eucgr.E00427 Eucalyptus grandis HOM05D007031 ORTHO05D008815 4.6e-35 151.4 101 73.3
Lsat_1_v5_gn_5_187960 Lactuca sativa HOM05D007031 ORTHO05D008815 4.6e-35 151.4 103 72.8
Aqoxy5G01014 Aquilegia oxysepala HOM05D007031 ORTHO05D008815 6.0e-35 151.0 102 68.6
HPP92_021039 Vanilla planifolia HOM05D007031 ORTHO05D008815 7.8e-35 150.6 102 71.6
HPP92_027426 Vanilla planifolia HOM05D007031 ORTHO05D008815 7.8e-35 150.6 102 71.6
Lj2A217G30 Lonicera japonica HOM05D007031 ORTHO05D008815 1.3e-34 149.8 102 69.6
ATR0317G125 Amborella trichopoda HOM05D007031 ORTHO05D008815 2.3e-34 149.1 101 67.3
SEGI_08804 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 2.3e-34 149.1 113 65.5
unitig_699.g19776 Utricularia gibba HOM05D007031 ORTHO05D008815 3.9e-34 148.3 103 68.0
BcaNung02861 Brassica carinata HOM05D007031 ORTHO05D008815 1.1e-33 146.7 100 72.0
CDE09G0628 Ceratophyllum demersum HOM05D005321 ORTHO05D006360 1.5e-33 146.4 103 68.9
Migut.E00966 Erythranthe guttata HOM05D007031 ORTHO05D008815 1.9e-33 146.0 102 67.6
Gohir.A08G170700 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.9e-33 146.0 102 70.6
PSO386G0128 Papaver somniferum HOM05D007031 ORTHO05D008815 1.9e-33 146.0 103 68.0
Migut.E01683 Erythranthe guttata HOM05D007031 ORTHO05D008815 2.5e-33 145.6 102 67.6
CiPaw.11G153700 Carya illinoinensis HOM05D007031 ORTHO05D008815 5.6e-33 144.4 100 69.0
PSO724G0679 Papaver somniferum HOM05D007031 ORTHO05D008815 5.6e-33 144.4 103 67.0
Actinidia14432 Actinidia chinensis HOM05D007031 ORTHO05D008815 7.3e-33 144.1 102 69.6
ECA232G3888 Erigeron canadensis HOM05D007031 ORTHO05D008815 1.2e-32 143.3 103 66.0
DCAR_027778 Daucus carota HOM05D007031 ORTHO05D008815 3.6e-32 141.7 102 65.7
Zm00001eb427450 Zea mays HOM05D007031 ORTHO05D008815 6.2e-32 141.0 110 59.1
Nitab4.5_0000712g0190 Nicotiana tabacum HOM05D007031 ORTHO05D008815 8.1e-32 140.6 159 49.1
Os04g0535400 Oryza sativa ssp. japonica HOM05D007031 ORTHO05D008815 3.1e-31 138.7 103 66.0
C01p26150 Brassica napus HOM05D007031 ORTHO05D008815 2.6e-30 135.6 83 73.5
A01p20650 Brassica napus HOM05D007031 ORTHO05D008815 5.8e-30 134.4 75 80.0
CSS0026472 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 2.2e-29 132.5 75 78.7
FAN04G1478 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.1e-28 130.2 75 78.7
Haze_07923 Corylus avellana HOM05D007031 ORTHO05D008815 1.4e-28 129.8 138 48.6
EL10Ac5g13074 Beta vulgaris HOM05D007031 ORTHO05D008815 2.4e-28 129.0 133 49.6
Nn6g33971 Nelumbo nucifera HOM05D007031 ORTHO05D008815 1.2e-27 126.7 99 58.6
Sabra03G0047000 Salix brachista HOM05D007031 ORTHO05D008815 2.1e-27 125.9 118 54.2
BolC7t45328H Brassica oleracea HOM05D007031 ORTHO05D008815 4.6e-27 124.8 85 71.8
MD04G1063700 Malus domestica HOM05D007031 ORTHO05D008815 5.1e-26 121.3 85 69.4
Sp7g15180 Schrenkiella parvula HOM05D007031 ORTHO05D008815 1.6e-24 116.3 75 70.7
THA.LOC104815507 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 2.8e-24 115.5 72 72.2
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 4.8e-24 114.8 73 72.6
VMungo1215G1202 Vigna mungo HOM05D007031 ORTHO05D008815 3.1e-23 112.1 75 68.0
BcaC06g33496 Brassica carinata HOM05D007031 ORTHO05D008815 5.3e-23 111.3 72 72.2
Manes.02G039100 Manihot esculenta HOM05D007031 ORTHO05D008815 1.5e-22 109.8 74 70.3
AUR62007512 Chenopodium quinoa HOM05D007031 ORTHO05D008815 1.3e-21 106.7 74 67.6
AUR62042788 Chenopodium quinoa HOM05D007031 ORTHO05D008815 1.3e-21 106.7 74 67.6
SMO134G0120 Selaginella moellendorffii HOM05D000076 ORTHO05D001279 9.3e-20 100.5 100 47.0
SMO274G0074 Selaginella moellendorffii HOM05D007031 ORTHO05D008815 9.3e-20 100.5 100 47.0
Nitab4.5_0002225g0110 Nicotiana tabacum HOM05D007031 ORTHO05D008815 1.3e-18 96.7 141 45.4
Oeu062969.1 Olea europaea HOM05D007031 ORTHO05D008815 1.3e-18 96.7 62 72.6
Pp3c5_26880 Physcomitrium patens HOM05D007031 ORTHO05D008815 3.0e-18 95.5 102 45.1
FAN02G0786 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.1e-17 93.6 65 67.7
Pp3c6_3420 Physcomitrium patens HOM05D029721 ORTHO05D008815 2.1e-16 89.4 83 54.2
Prupe.5G068700 Prunus persica HOM05D007031 ORTHO05D008815 2.8e-16 89.0 104 46.2
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 5.3e-15 84.7 59 67.8
SalBow6G3941 Salvia bowleyana HOM05D007031 ORTHO05D008815 2.9e-13 79.0 71 54.9
Cre03.g169200 Chlamydomonas reinhardtii HOM05D007031 ORTHO05D008815 5.4e-12 74.7 85 45.9
MCO15G691 Micromonas commoda HOM05D007031 ORTHO05D008815 5.4e-12 74.7 83 45.8
Sc22g0000840 Simmondsia chinensis HOM05D007031 ORTHO05D008815 3.0e-10 68.9 50 70.0
GSVIVG01001319001 Vitis vinifera HOM05D007031 ORTHO05D008815 1.9e-09 66.2 43 74.4
Medtr5g012525 Medicago truncatula HOM05D007031 ORTHO05D008815 3.3e-09 65.5 46 67.4
SEGI_18261 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 1.3e-08 63.5 63 54.0


User provided reference genes

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