Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 3.4e-22 107.5 54 100.0
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.1e-20 102.4 54 90.7
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 1.2e-19 99.0 53 96.2
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 3.8e-18 94.0 54 83.3
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 5.5e-17 90.1 54 85.2
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 7.2e-17 89.7 53 84.9
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 7.2e-17 89.7 53 84.9
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 9.5e-17 89.4 54 85.2
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 1.2e-16 89.0 54 81.5
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 3.6e-16 87.4 54 83.3
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 4.7e-16 87.0 53 83.0
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 6.1e-16 86.7 54 83.3
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 6.1e-16 86.7 53 83.0
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 8.0e-16 86.3 53 83.0
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 8.0e-16 86.3 54 79.6
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 1.0e-15 85.9 53 81.1
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 1.0e-15 85.9 53 81.1
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.4e-15 85.5 53 83.0
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.4e-15 85.5 54 81.5
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.4e-15 85.5 53 81.1
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 1.4e-15 85.5 53 79.2
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 1.8e-15 85.1 53 77.4
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 2.3e-15 84.7 54 81.5
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 2.3e-15 84.7 54 77.8
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 2.3e-15 84.7 54 77.8
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 4.0e-15 84.0 54 79.6
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 5.2e-15 83.6 54 79.6
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 5.2e-15 83.6 53 77.4
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 6.8e-15 83.2 53 79.2
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 1.2e-14 82.4 53 79.2
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 1.2e-14 82.4 54 77.8
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 1.5e-14 82.0 54 75.9
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 1.5e-14 82.0 54 75.9
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 2.0e-14 81.6 52 78.8
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 2.0e-14 81.6 54 81.5
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 2.0e-14 81.6 53 77.4
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 2.6e-14 81.3 53 77.4
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 2.6e-14 81.3 53 77.4
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 2.6e-14 81.3 53 77.4
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 2.6e-14 81.3 53 75.5
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 4.4e-14 80.5 53 77.4
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 5.7e-14 80.1 53 77.4
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.7e-14 80.1 49 75.5
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.7e-14 80.1 49 75.5
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 1.3e-13 79.0 53 73.6
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 1.3e-13 79.0 47 78.7
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 1.3e-13 79.0 54 74.1
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 1.3e-13 79.0 54 70.4
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 1.3e-13 79.0 53 75.5
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 1.7e-13 78.6 54 70.4
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.7e-13 78.6 54 74.1
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 2.2e-13 78.2 52 75.0
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 2.2e-13 78.2 52 75.0
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 2.2e-13 78.2 48 85.4
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 2.2e-13 78.2 50 78.0
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 2.2e-13 78.2 54 74.1
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 2.2e-13 78.2 51 78.4
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 3.7e-13 77.4 47 80.9
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 3.7e-13 77.4 53 71.7
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 6.3e-13 76.6 54 68.5
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 6.3e-13 76.6 47 80.9
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 1.1e-12 75.9 46 80.4
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 1.1e-12 75.9 47 78.7
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 1.4e-12 75.5 54 75.9
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 1.4e-12 75.5 54 75.9
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 3.2e-12 74.3 53 73.6
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 3.2e-12 74.3 54 72.2
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 4.1e-12 73.9 49 75.5
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 4.1e-12 73.9 48 75.0
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 5.4e-12 73.6 48 77.1
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 5.4e-12 73.6 49 73.5
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 7.0e-12 73.2 53 71.7
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 9.2e-12 72.8 49 77.6
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 9.2e-12 72.8 52 73.1
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 9.2e-12 72.8 49 75.5
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 1.2e-11 72.4 53 67.9
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 1.2e-11 72.4 49 73.5
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 5.9e-11 70.1 53 66.0
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 7.8e-11 69.7 48 72.9
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 1.0e-10 69.3 48 64.6
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 6.6e-10 66.6 45 77.8
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 6.6e-10 66.6 47 66.0
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 1.9e-09 65.1 42 64.3
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 9.5e-09 62.8 38 76.3
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 6.1e-08 60.1 48 62.5
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 8.0e-08 59.7 58 55.2
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 7.5e-06 53.1 33 78.8


User provided reference genes

Program Settings