Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.1e-140 502.3 246 100.0
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 3.9e-134 481.5 248 95.2
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 4.9e-129 464.5 246 91.5
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 1.4e-120 436.4 249 85.1
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 2.6e-85 319.3 257 65.0
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.7e-85 318.2 240 67.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.2e-84 316.2 252 63.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.7e-84 315.5 240 66.2
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 8.2e-84 314.3 253 64.4
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 1.8e-83 313.2 255 63.1
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.0e-81 307.4 242 64.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 5.0e-81 305.1 259 63.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 6.5e-81 304.7 214 68.7
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.1e-80 303.9 227 65.6
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 2.5e-80 302.8 251 62.9
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 3.2e-80 302.4 241 63.5
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 4.2e-80 302.0 242 65.3
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.2e-80 302.0 252 61.1
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 4.2e-80 302.0 248 62.5
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 9.4e-80 300.8 245 62.4
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 9.4e-80 300.8 242 62.0
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-79 300.1 233 64.4
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.6e-79 300.1 249 62.2
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.1e-79 299.7 242 62.8
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.4e-78 297.0 244 61.9
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.4e-78 297.0 241 59.8
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.4e-78 297.0 245 60.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.8e-78 296.6 271 59.8
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.8e-78 296.6 196 71.4
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.8e-78 296.6 246 61.8
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 2.3e-78 296.2 252 58.7
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 3.0e-78 295.8 217 65.4
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.0e-78 295.8 262 58.0
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.0e-78 295.4 235 64.7
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 4.0e-78 295.4 241 59.3
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 4.0e-78 295.4 222 63.1
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 5.2e-78 295.0 248 61.3
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 6.8e-78 294.7 201 68.7
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 1.2e-77 293.9 249 61.0
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.2e-77 293.9 241 59.3
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 3.4e-77 292.4 245 62.0
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 3.4e-77 292.4 245 60.8
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.4e-77 292.0 246 58.5
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.4e-77 292.0 216 65.7
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 4.4e-77 292.0 254 59.4
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 9.8e-77 290.8 246 60.2
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 1.7e-76 290.0 239 61.1
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.2e-76 289.7 246 59.8
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 3.7e-76 288.9 195 67.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 6.3e-76 288.1 246 60.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 8.3e-76 287.7 245 60.0
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 1.1e-75 287.3 230 63.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.4e-75 287.0 245 60.0
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.4e-75 287.0 196 67.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.8e-75 286.6 254 58.7
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 2.4e-75 286.2 236 61.4
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 3.1e-75 285.8 245 59.6
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.1e-75 285.4 245 59.6
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 5.4e-75 285.0 244 59.0
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 5.4e-75 285.0 234 61.5
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 5.4e-75 285.0 240 56.2
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.1e-75 284.3 245 59.6
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 9.1e-75 284.3 244 57.8
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 4.5e-74 282.0 246 60.6
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 5.9e-74 281.6 193 65.8
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.7e-73 280.0 241 59.3
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.2e-73 279.6 214 64.0
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.9e-73 279.3 219 63.5
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 6.5e-73 278.1 245 57.6
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.5e-73 277.7 220 62.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 9.4e-72 274.2 238 58.4
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 9.4e-72 274.2 275 54.2
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 9.4e-72 274.2 196 66.3
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 9.4e-72 274.2 269 55.8
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 4.7e-71 271.9 246 56.5
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 6.8e-70 268.1 237 56.5
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.5e-69 266.9 294 47.3
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 198 63.6
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.4e-69 265.8 231 59.3
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 4.4e-69 265.4 227 60.4
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 4.4e-69 265.4 198 63.6
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 7.5e-69 264.6 208 61.5
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.3e-68 263.8 246 55.7
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 2.2e-68 263.1 327 45.6
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 3.1e-67 259.2 252 53.2
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 4.1e-67 258.8 244 53.7
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 9.2e-67 257.7 163 73.0
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 5.9e-66 255.0 250 54.8
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 2.9e-65 252.7 219 57.1
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 3.8e-65 252.3 313 46.6
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.5e-64 250.4 224 56.2
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.5e-64 249.6 224 56.2
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 7.3e-64 248.1 255 52.9
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 7.3e-64 248.1 255 52.9
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 9.5e-64 247.7 249 54.6
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 9.5e-64 247.7 237 53.6
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.6e-63 246.9 198 56.6
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 2.8e-63 246.1 224 56.2
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 6.1e-63 245.0 232 54.7
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 6.8e-62 241.5 243 53.9
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 7.5e-61 238.0 309 45.0
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.7e-60 236.9 242 50.8
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 9.2e-59 231.1 198 54.0
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 2.3e-57 226.5 200 55.0
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 5.0e-57 225.3 224 52.7
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 6.6e-57 224.9 191 56.5
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 1.1e-56 224.2 200 55.0
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-54 217.2 253 49.4
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 2.0e-53 213.4 212 52.4
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.3e-49 200.7 242 44.6
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.8e-47 193.0 249 45.4
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 8.9e-38 161.4 198 39.4
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.4e-35 153.3 185 38.9
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 3.9e-33 146.0 119 58.0
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 6.9e-30 135.2 162 35.8
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 2.1e-26 123.6 177 36.7
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 3.0e-17 93.2 112 48.2
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 9.6e-16 88.2 105 50.5


User provided reference genes

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