Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.2e-72 275.4 129 100.0
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.9e-54 213.8 134 78.4
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.4e-36 155.2 129 63.6
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.8e-22 109.0 126 50.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.3e-19 100.1 101 55.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.2e-19 99.4 100 53.0
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.4e-19 97.8 109 53.2
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.4e-18 95.9 95 53.7
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.2e-18 95.5 89 56.2
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 4.1e-18 95.1 89 52.8
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 4.1e-18 95.1 109 49.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 5.4e-18 94.7 87 52.9
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 5.4e-18 94.7 109 47.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.0e-18 94.4 91 48.4
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 7.0e-18 94.4 100 53.0
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.2e-17 93.6 93 50.5
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.6e-17 93.2 95 47.4
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.0e-17 92.8 102 46.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.0e-17 92.8 107 46.7
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.0e-17 92.8 90 53.3
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.0e-17 92.8 91 48.4
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.0e-17 92.8 88 52.3
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.7e-17 92.4 102 48.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.7e-17 92.4 88 51.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.6e-17 91.7 97 49.5
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.6e-17 91.7 102 46.1
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.3e-16 90.1 88 52.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.3e-16 90.1 93 50.5
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.3e-16 90.1 105 48.6
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.7e-16 89.7 96 49.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-16 89.0 124 40.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 3.0e-16 89.0 109 45.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.9e-16 88.6 113 45.1
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.9e-16 88.6 105 45.7
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 3.9e-16 88.6 95 49.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 5.0e-16 88.2 88 48.9
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.0e-16 88.2 93 51.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.0e-16 88.2 99 44.4
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 6.6e-16 87.8 95 46.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.6e-16 87.4 88 51.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 8.6e-16 87.4 98 48.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.1e-15 87.0 95 52.6
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.5e-15 86.7 124 40.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.5e-15 86.7 94 46.8
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.5e-15 86.7 90 47.8
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.9e-15 86.3 104 46.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.9e-15 86.3 124 39.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.9e-15 86.3 124 39.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.5e-15 85.9 89 48.3
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 3.3e-15 85.5 104 48.1
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 3.3e-15 85.5 87 54.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.3e-15 85.5 89 52.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.3e-15 85.5 92 46.7
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.3e-15 85.1 104 45.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.3e-15 85.1 127 41.7
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.3e-15 85.1 104 49.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 4.3e-15 85.1 88 50.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.3e-15 84.3 95 45.3
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.3e-15 84.3 91 47.3
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 9.5e-15 84.0 115 42.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-14 83.6 88 47.7
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 91 47.3
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.6e-14 83.2 90 47.8
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.6e-14 83.2 94 52.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-14 82.8 87 52.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 2.1e-14 82.8 91 48.4
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 3.6e-14 82.0 88 48.9
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 3.6e-14 82.0 87 51.7
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.7e-14 81.6 103 50.5
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.2e-14 81.3 101 49.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.2e-14 81.3 100 49.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.0e-14 80.9 117 45.3
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 8.0e-14 80.9 111 45.9
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 8.0e-14 80.9 87 49.4
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.0e-14 80.9 85 48.2
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.0e-14 80.9 89 51.7
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.0e-14 80.9 98 42.9
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-13 80.1 88 46.6
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 95 44.2
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.8e-13 79.7 98 45.9
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.8e-13 79.7 92 47.8
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 2.3e-13 79.3 91 45.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-13 79.3 88 45.5
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 2.3e-13 79.3 88 45.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.3e-13 79.3 91 52.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.3e-13 79.3 134 43.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.1e-13 79.0 91 45.1
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.0e-13 78.6 89 47.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.0e-13 78.6 87 50.6
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-13 78.2 93 48.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-13 78.2 93 48.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-13 78.2 93 48.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 5.2e-13 78.2 93 48.4
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.2e-13 78.2 88 47.7
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 5.2e-13 78.2 122 39.3
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.8e-13 77.8 101 44.6
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.8e-13 77.8 92 47.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 6.8e-13 77.8 84 51.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 6.8e-13 77.8 88 51.1
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.9e-13 77.4 101 44.6
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.9e-13 77.4 88 48.9
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-12 77.0 98 43.9
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-12 77.0 98 43.9
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.2e-12 77.0 114 40.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.5e-12 76.6 91 45.1
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-12 76.6 91 45.1
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.5e-12 76.6 91 45.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.5e-12 76.6 90 47.8
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.0e-12 76.3 98 43.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.0e-12 76.3 91 45.1
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.0e-12 76.3 98 43.9
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.0e-12 76.3 91 45.1
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.0e-12 76.3 96 46.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 3.4e-12 75.5 89 44.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 4.4e-12 75.1 129 40.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.4e-12 75.1 90 46.7
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 4.4e-12 75.1 94 43.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 5.8e-12 74.7 87 50.6
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.8e-12 74.7 91 44.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 7.5e-12 74.3 92 50.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 7.5e-12 74.3 92 50.0
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 7.5e-12 74.3 84 48.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.5e-12 74.3 83 45.8
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 9.8e-12 73.9 115 41.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-11 73.6 91 48.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.7e-11 73.2 101 45.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.7e-11 73.2 87 47.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.9e-11 72.4 88 48.9
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.9e-11 72.4 81 45.7
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.9e-11 72.4 91 41.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.9e-11 72.4 91 46.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.7e-11 72.0 87 43.7
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.7e-11 72.0 87 47.1
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 3.7e-11 72.0 87 49.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.7e-11 72.0 90 44.4
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.9e-11 71.6 116 43.1
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 4.9e-11 71.6 87 46.0
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.9e-11 71.6 89 48.3
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.9e-11 71.6 90 44.4
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 8.3e-11 70.9 90 47.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.4e-10 70.1 125 39.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 110 40.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.9e-10 69.7 90 48.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.9e-10 69.7 92 47.8
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.2e-10 68.9 86 44.2
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.2e-10 68.9 95 44.2
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.1e-10 68.6 96 41.7
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 7.0e-10 67.8 92 42.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.0e-10 67.8 89 47.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.0e-10 67.8 93 45.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.2e-10 67.4 92 42.4
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-09 67.0 82 47.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.6e-09 66.6 94 43.6
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.0e-09 66.2 87 41.4
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.0e-09 66.2 103 43.7
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 102 42.2
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-09 66.2 90 43.3
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.7e-09 65.9 104 41.3
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.5e-09 65.5 102 41.2
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.5e-09 65.5 80 41.2
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.6e-09 65.1 85 43.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.0e-09 64.7 92 44.6
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 6.0e-09 64.7 84 42.9
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 6.0e-09 64.7 81 38.3
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 7.8e-09 64.3 91 44.0
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.0e-08 63.9 82 47.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-08 63.9 87 47.1
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.3e-08 62.8 46 56.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 89 43.8
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-08 62.4 98 41.8
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.0e-08 62.4 87 43.7
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.0e-08 62.4 87 44.8
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.0e-08 61.6 90 45.6
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 8.6e-08 60.8 103 40.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.5e-07 59.3 91 42.9
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.5e-07 57.4 103 39.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-06 57.0 93 40.9
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.6e-06 56.6 90 44.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-06 55.5 91 41.8
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.2e-06 54.7 61 44.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.1e-06 54.3 45 55.6


User provided reference genes

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