Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 0.0e+00 1150.6 658 100.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 4.3e-281 971.1 662 84.1
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 5.2e-242 841.3 666 75.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 3.4e-132 476.5 691 53.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 8.0e-118 428.7 964 40.6
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 3.0e-117 426.8 269 87.0
ClCG01G022640 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.3e-80 305.1 368 62.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 7.7e-36 156.4 729 33.1
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.9e-34 151.8 449 35.0
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.6e-33 147.5 724 30.0
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 8.8e-32 142.9 272 41.9
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 7.4e-31 139.8 692 29.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.3e-30 136.7 721 29.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.8e-29 135.2 374 35.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.3e-29 133.7 294 37.4
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.0e-28 131.7 329 36.8
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 5.9e-28 130.2 329 38.0
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.7e-28 129.8 235 42.1
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 7.7e-28 129.8 257 39.7
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.7e-27 128.6 269 40.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.7e-27 128.6 296 38.2
Sed0014700 Sechium edule HOM05D013728 ORTHO05D003557 2.2e-27 128.3 142 54.9
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 9.4e-26 122.9 348 35.9
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.1e-25 121.7 696 29.2
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.7e-25 121.3 698 28.4
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.7e-25 120.6 386 35.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.8e-24 118.6 299 36.5
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.0e-24 117.9 274 40.1
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.0e-24 117.5 479 31.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.0e-24 117.5 298 34.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 5.2e-24 117.1 265 37.4
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.0e-23 115.2 740 26.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.0e-23 115.2 748 28.6
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 9.7e-23 112.8 756 28.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.7e-22 112.1 836 26.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.8e-22 111.3 762 28.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.8e-22 110.5 382 34.8
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.1e-21 109.4 354 31.1
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.4e-21 108.2 422 28.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 3.1e-21 107.8 522 30.1
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 7.0e-21 106.7 632 28.8
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.2e-20 105.9 410 29.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.2e-20 105.9 745 27.9
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.6e-20 105.5 213 44.6
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.7e-20 104.8 443 32.1
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.7e-20 104.8 138 50.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.7e-20 104.8 312 33.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.7e-20 104.8 689 25.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.5e-20 104.4 404 32.4
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.5e-20 104.0 836 26.0
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 4.5e-20 104.0 109 61.5
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 5.9e-20 103.6 633 28.8
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 7.7e-20 103.2 677 26.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.7e-20 103.2 503 31.0
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 7.7e-20 103.2 447 30.9
ClCG04G001820 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.2e-19 101.7 98 64.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.8e-19 100.9 632 28.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 5.0e-19 100.5 450 29.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 8.5e-19 99.8 684 26.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-18 99.4 709 26.1
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.1e-18 99.4 435 32.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.1e-18 99.4 742 26.7
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-18 99.0 665 27.2
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.9e-18 98.6 478 29.5
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.5e-18 98.2 483 30.6
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 4.2e-18 97.4 775 25.8
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 5.5e-18 97.1 312 32.1
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 7.2e-18 96.7 208 37.5
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 9.4e-18 96.3 383 30.3
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.2e-17 95.9 338 30.5
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.1e-17 95.1 497 31.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.7e-17 94.7 382 33.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.6e-17 94.4 322 31.1
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.6e-17 94.4 338 30.5
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 3.6e-17 94.4 704 26.6
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.6e-17 94.4 743 27.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 4.7e-17 94.0 272 38.2
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 8.0e-17 93.2 457 29.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.0e-16 92.8 127 48.0
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.0e-16 92.8 186 36.6
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.3e-16 91.7 102 58.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-16 91.3 442 29.4
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 6.8e-16 90.1 468 29.5
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 8.8e-16 89.7 203 34.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 8.8e-16 89.7 203 34.0
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 8.8e-16 89.7 711 30.0
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.8e-16 89.7 787 26.4
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.2e-15 89.4 632 25.3
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.5e-15 89.0 456 27.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.5e-15 89.0 465 30.8
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.0e-15 88.6 458 31.7
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.6e-15 88.2 464 30.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.4e-15 87.8 457 27.1
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.7e-15 87.0 511 30.7
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-14 85.9 327 31.8
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.7e-14 85.5 313 31.9
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.8e-14 84.0 678 26.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 4.8e-14 84.0 382 29.6
Sed0016406 Sechium edule HOM05D013728 ORTHO05D003557 4.8e-14 84.0 294 38.1
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 4.8e-14 84.0 641 26.7
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 8.3e-14 83.2 785 25.6
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.8e-13 82.0 257 29.6
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-13 81.6 663 26.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 3.1e-13 81.3 669 28.1
ClCG06G018410 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.1e-13 81.3 65 78.5
MELO3C009867.2 Cucumis melo HOM05D013728 ORTHO05D003557 5.4e-13 80.5 123 44.7
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 7.0e-13 80.1 682 26.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.6e-12 79.0 650 26.5
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.6e-12 79.0 609 23.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-12 78.6 469 29.4
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-12 78.6 469 29.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.5e-12 77.8 652 25.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.5e-12 77.8 502 28.5
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.5e-12 77.4 218 30.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-12 77.4 485 29.1
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 4.5e-12 77.4 485 29.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 4.5e-12 77.4 262 29.4
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.9e-12 77.0 716 26.4
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 7.7e-12 76.6 722 27.4
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.0e-11 76.3 727 23.7
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.7e-11 75.5 454 28.4
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-11 75.1 664 26.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 2.3e-11 75.1 690 25.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 3.8e-11 74.3 103 45.6
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.8e-11 74.3 775 26.3
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.1e-10 72.8 472 25.2
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.2e-10 71.2 765 24.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 4.2e-10 70.9 536 25.4
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.2e-10 70.9 718 25.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 7.2e-10 70.1 460 26.7
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.6e-09 68.9 44 72.7
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.8e-09 68.2 62 54.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 6.1e-09 67.0 45 71.1
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.8e-08 65.5 264 28.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.3e-08 65.1 39 76.9
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.0e-08 64.7 740 28.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.0e-08 64.7 765 24.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 2.0e-07 62.0 669 28.4
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 2.6e-07 61.6 371 26.1
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 3.4e-07 61.2 80 46.2
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 4.4e-07 60.8 36 83.3
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 5.7e-07 60.5 362 28.2
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 9.8e-07 59.7 454 31.1
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 9.8e-07 59.7 39 74.4
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-06 59.3 434 26.3
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.3e-06 59.3 35 80.0
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.2e-06 58.5 172 33.7
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 2.8e-06 58.2 63 42.9
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.7e-06 57.8 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.7e-06 57.8 36 75.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 4.9e-06 57.4 40 62.5
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 8.3e-06 56.6 70 48.6


User provided reference genes

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