Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 2.4e-136 488.8 239 100.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 3.8e-110 401.7 279 73.5
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 6.7e-107 391.0 237 81.9
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 3.4e-90 335.5 233 73.8
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.3e-78 296.2 241 64.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 3.0e-75 285.8 239 64.0
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.5e-74 283.5 239 60.7
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.0e-74 283.1 237 61.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.6e-74 282.7 236 63.6
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 5.8e-74 281.6 238 63.9
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.7e-73 280.0 239 61.5
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.9e-73 279.3 239 60.3
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 4.9e-73 278.5 239 61.1
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 8.3e-73 277.7 241 59.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.4e-72 276.2 241 59.3
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 9.2e-72 274.2 241 59.3
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 9.2e-72 274.2 235 59.1
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.2e-71 273.9 239 61.1
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.6e-71 273.5 239 61.1
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.0e-71 273.1 241 61.0
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.7e-71 272.7 240 60.0
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 2.7e-71 272.7 238 60.1
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 3.5e-71 272.3 241 60.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.5e-71 272.3 235 60.9
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.6e-71 271.9 242 59.5
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 7.8e-71 271.2 235 62.1
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.0e-70 270.8 240 60.0
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.0e-70 270.8 236 60.6
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.3e-70 270.4 238 59.7
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.3e-70 270.4 237 58.2
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 6.6e-70 268.1 235 61.3
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 6.6e-70 268.1 237 57.4
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.1e-69 267.3 237 57.8
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.9e-69 266.5 231 61.0
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 2.5e-69 266.2 235 60.9
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.3e-69 265.8 235 60.4
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 7.3e-69 264.6 242 60.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 9.5e-69 264.2 235 60.0
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.6e-68 263.5 233 60.1
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.8e-68 262.7 238 60.1
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 6.2e-68 261.5 234 59.4
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 6.2e-68 261.5 237 57.8
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 1.4e-67 260.4 248 56.5
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 2.3e-67 259.6 235 57.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 4.0e-67 258.8 234 58.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.0e-67 258.8 238 57.6
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.5e-66 256.9 240 57.9
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.5e-66 256.9 237 59.5
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.0e-66 256.5 229 57.2
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 4.4e-66 255.4 235 55.3
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.7e-65 253.4 238 56.7
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.3e-65 251.1 240 55.4
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.3e-65 251.1 240 55.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.4e-64 250.4 233 57.5
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.4e-64 249.6 240 56.7
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 4.1e-64 248.8 233 55.8
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.4e-64 248.4 237 52.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 7.0e-64 248.1 238 55.0
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 7.0e-64 248.1 240 56.7
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 9.2e-64 247.7 237 56.5
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 9.2e-64 247.7 237 52.7
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.6e-63 246.9 218 59.6
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 2.0e-63 246.5 231 55.8
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.7e-63 246.1 240 55.4
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.5e-63 245.7 238 55.0
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 7.8e-63 244.6 245 56.3
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.0e-62 244.2 217 59.9
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.3e-62 243.8 221 57.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 8.6e-62 241.1 238 54.6
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.1e-61 240.7 239 54.4
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.9e-61 240.0 238 54.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.9e-61 240.0 237 53.2
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.9e-61 240.0 231 57.6
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.5e-61 239.6 221 57.9
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 4.3e-61 238.8 240 52.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 9.5e-61 237.7 214 57.9
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 2.1e-60 236.5 241 53.9
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 8.1e-60 234.6 221 52.0
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.8e-59 233.4 239 52.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.8e-59 233.4 220 57.7
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 3.1e-59 232.6 238 52.5
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 3.1e-59 232.6 219 56.2
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 3.1e-59 232.6 236 49.2
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.0e-59 232.3 243 54.3
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 6.8e-59 231.5 238 51.3
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 8.9e-59 231.1 240 52.1
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.5e-58 230.3 238 52.9
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 2.0e-58 229.9 236 48.7
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.6e-58 229.6 243 54.3
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 7.5e-58 228.0 251 48.2
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-57 226.5 243 53.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.2e-57 226.5 221 55.7
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.2e-57 226.5 256 50.8
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.7e-57 225.7 237 54.0
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.7e-55 219.5 239 50.2
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 6.0e-55 218.4 292 45.9
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 7.8e-55 218.0 246 49.2
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 5.6e-53 211.8 255 47.8
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 5.2e-51 205.3 217 50.7
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.6e-50 203.0 175 54.3
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.1e-48 197.6 237 47.3
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.6e-47 193.7 215 48.8
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 5.1e-46 188.7 239 45.6
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 6.6e-46 188.3 163 60.1
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.8e-44 183.0 242 43.8
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.4e-43 180.6 173 59.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.0e-42 176.8 240 45.0
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 3.4e-42 176.0 237 43.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 8.4e-41 171.4 231 39.8
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 7.1e-40 168.3 230 42.2
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 3.5e-39 166.0 271 38.7
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 5.6e-37 158.7 239 41.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.1e-35 152.9 180 43.3
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-34 150.6 139 47.5
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.2e-33 146.7 186 43.5
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.2e-31 141.0 142 50.0
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.7e-31 139.8 236 38.1
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 6.0e-31 138.7 95 65.3
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 6.0e-31 138.7 239 37.2
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 3.3e-29 132.9 143 53.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 5.8e-26 122.1 114 57.0
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.9e-25 119.0 104 60.6
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.1e-24 117.9 92 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 4.2e-24 115.9 142 48.6
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 4.2e-24 115.9 216 36.1
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.3e-21 105.9 145 48.3
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.6e-20 104.0 102 54.9
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 7.6e-18 95.1 216 32.9
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.5e-16 90.1 187 34.2
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 6.3e-12 75.5 122 44.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.1e-11 74.7 113 38.9
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.4e-11 74.3 76 57.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.1e-11 72.8 135 38.5
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.2e-10 71.2 89 51.7
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.0e-10 70.5 53 56.6
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.7e-10 68.6 95 45.3
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.0e-09 68.2 138 34.1
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.0e-09 68.2 77 53.2
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 2.9e-09 66.6 183 25.7
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 4.2e-08 62.8 103 40.8


User provided reference genes

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