Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.1e-86 320.5 152 100.0
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.4e-81 306.2 152 94.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.0e-68 261.9 187 70.1
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 9.6e-67 256.9 149 80.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 6.7e-60 234.2 145 75.9
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.3e-59 231.9 138 76.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 7.4e-59 230.7 139 75.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 7.4e-59 230.7 161 68.3
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 7.4e-59 230.7 151 70.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.3e-58 229.9 151 72.8
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.6e-58 229.6 151 71.5
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.8e-58 228.8 151 71.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.7e-58 228.4 150 71.3
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 8.2e-58 227.3 161 67.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 8.2e-58 227.3 150 72.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.1e-57 226.9 143 75.5
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-57 226.9 151 70.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.4e-57 226.5 145 73.1
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 4.1e-57 224.9 146 71.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.1e-57 224.9 151 72.8
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.9e-57 224.2 140 74.3
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.0e-56 222.6 137 73.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.6e-56 222.2 144 73.6
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-55 219.9 153 70.6
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.7e-55 219.5 150 68.7
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-55 218.8 140 70.7
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-55 218.8 140 70.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.5e-55 217.6 140 70.0
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.4e-54 216.5 149 67.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.9e-54 216.1 157 65.6
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.5e-54 215.7 141 73.8
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-54 215.7 140 70.0
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 4.2e-54 214.9 143 70.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 5.5e-54 214.5 149 66.4
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 5.5e-54 214.5 143 69.2
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 5.5e-54 214.5 144 71.5
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 7.2e-54 214.2 144 71.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 7.2e-54 214.2 144 71.5
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.7e-53 212.2 142 69.7
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 6.1e-53 211.1 136 71.3
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 6.1e-53 211.1 144 68.8
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 7.9e-53 210.7 144 68.8
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.0e-52 210.3 142 69.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.8e-52 209.5 145 70.3
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.3e-52 209.1 144 67.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 2.3e-52 209.1 144 67.4
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.0e-52 208.8 137 70.8
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.0e-52 208.8 138 71.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 3.9e-52 208.4 138 71.7
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 5.1e-52 208.0 136 70.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 6.7e-52 207.6 142 69.7
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.8e-52 207.2 143 66.4
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.8e-52 207.2 143 66.4
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 8.8e-52 207.2 152 63.8
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.1e-51 206.8 138 71.0
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.6e-51 205.7 144 70.1
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.3e-51 205.3 138 71.0
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-51 204.9 149 65.1
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.4e-51 204.1 142 65.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 9.7e-51 203.8 138 70.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.3e-50 203.4 142 69.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.8e-50 202.2 149 62.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 3.7e-50 201.8 150 63.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 4.8e-50 201.4 135 67.4
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.3e-50 201.1 142 64.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 6.3e-50 201.1 143 65.0
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 8.2e-50 200.7 148 66.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.1e-49 200.3 138 67.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-49 200.3 143 65.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-49 200.3 143 65.7
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-49 199.9 145 68.3
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-49 199.5 147 65.3
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-49 199.5 147 65.3
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-49 199.5 147 65.3
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.8e-49 199.5 144 63.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.1e-49 198.7 147 65.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.1e-49 198.7 147 65.3
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.3e-49 198.0 140 64.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.9e-49 197.6 148 64.2
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-48 196.8 140 65.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.2e-48 196.8 154 64.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.2e-48 196.8 142 66.9
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-48 196.8 147 63.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.5e-48 196.4 145 64.1
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.5e-48 196.4 136 68.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.0e-48 196.1 141 65.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.0e-48 196.1 141 67.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-48 196.1 145 64.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-48 196.1 145 64.1
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.4e-48 195.3 145 60.7
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.4e-48 195.3 157 61.1
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 5.9e-48 194.5 141 67.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 7.7e-48 194.1 140 66.4
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-47 193.7 151 61.6
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-47 193.7 141 66.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-47 193.7 137 67.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-47 193.7 137 67.9
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.3e-47 193.4 137 62.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.7e-47 193.0 148 63.5
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.2e-47 192.6 137 67.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-47 192.2 151 60.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.8e-47 191.8 152 65.1
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 5.0e-47 191.4 151 60.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 8.5e-47 190.7 138 62.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-46 190.3 152 58.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-46 190.3 152 58.6
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-46 190.3 142 62.7
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-46 190.3 140 63.6
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 3.2e-46 188.7 157 58.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.2e-46 188.7 145 64.8
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.2e-46 187.6 142 60.6
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.6e-45 186.4 132 66.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.1e-45 186.0 139 61.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.6e-45 185.3 131 66.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.1e-45 184.5 149 60.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-43 179.9 144 62.5
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.0e-43 179.5 139 61.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.6e-43 179.1 147 61.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 7.4e-43 177.6 132 63.6
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.7e-42 176.4 141 58.9
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.7e-42 176.4 139 60.4
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-42 176.0 144 61.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 8.2e-42 174.1 141 61.0
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-41 173.7 139 57.6
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 4.1e-41 171.8 140 60.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.0e-40 169.5 143 57.3
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.6e-40 169.1 148 56.8
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.5e-40 168.7 98 74.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.5e-40 168.7 140 57.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.5e-40 168.3 140 57.9
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.7e-40 167.5 140 59.3
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 7.7e-40 167.5 143 56.6
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.7e-39 166.4 138 55.8
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-39 166.0 214 44.9
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 3.8e-39 165.2 149 57.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 5.0e-39 164.9 140 57.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.6e-37 159.8 157 53.5
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.1e-37 159.5 149 55.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.1e-37 159.5 135 55.6
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 8.0e-37 157.5 137 57.7
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 8.8e-36 154.1 115 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.2e-35 153.7 146 50.0
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.0e-35 152.9 139 49.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.7e-34 148.7 98 66.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.1e-33 147.1 146 47.3
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-33 146.4 147 53.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.8e-33 146.4 143 52.4
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.4e-33 146.0 146 49.3
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-32 143.3 146 50.7
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.0e-31 140.6 116 60.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 5.5e-30 134.8 138 47.8
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 6.8e-28 127.9 137 48.2
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.5e-27 126.7 129 52.7
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.2e-21 107.1 141 43.3
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.3e-20 102.8 75 69.3
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.7e-19 98.2 71 57.7
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.7e-18 96.7 105 51.4
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.7e-18 95.5 119 41.2
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-18 95.1 53 67.9
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 6.3e-18 94.7 134 41.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 9.2e-17 90.9 50 70.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.5e-16 89.0 66 71.2
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.8e-16 87.8 85 57.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 7.8e-16 87.8 103 47.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.8e-15 85.5 74 64.9
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.5e-14 82.8 75 60.0
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 4.4e-11 72.0 39 66.7
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 9.8e-11 70.9 63 60.3
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.1e-06 57.4 71 49.3


User provided reference genes

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