Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.4e-148 529.6 271 100.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.2e-136 490.0 320 80.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.3e-114 416.8 331 69.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.5e-110 402.5 320 66.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.1e-84 317.4 194 81.4
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 7.4e-78 294.7 324 50.3
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.7e-77 292.4 328 50.3
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 5.9e-75 285.0 322 50.9
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.9e-74 282.7 326 48.8
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 6.5e-74 281.6 328 49.7
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.9e-73 280.0 325 48.6
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.9e-73 280.0 320 49.1
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 4.2e-73 278.9 329 49.2
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 9.4e-73 277.7 301 52.5
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.6e-72 276.9 322 50.0
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 6.1e-72 275.0 329 48.6
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 6.1e-72 275.0 245 58.0
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 6.1e-72 275.0 327 48.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.0e-72 274.6 327 50.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.0e-71 274.2 324 48.1
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.0e-71 274.2 326 47.2
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.8e-71 273.5 322 47.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.8e-71 273.5 322 47.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.0e-70 270.0 324 46.3
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.5e-70 268.1 324 47.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 9.7e-70 267.7 335 47.8
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 9.7e-70 267.7 331 48.3
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.7e-69 266.9 316 47.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.7e-69 265.8 325 48.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.3e-69 265.0 330 46.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.3e-69 265.0 326 45.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 8.2e-69 264.6 327 47.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 8.2e-69 264.6 270 51.1
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 8.2e-69 264.6 322 47.5
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.4e-68 263.8 329 47.4
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 2.4e-68 263.1 332 46.1
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.1e-68 262.3 333 47.1
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 7.0e-68 261.5 256 55.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.6e-67 260.4 325 47.4
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.0e-67 260.0 327 47.7
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.0e-67 260.0 338 47.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 3.5e-67 259.2 332 44.6
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 7.7e-67 258.1 326 47.9
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.3e-66 257.3 329 45.9
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.7e-66 256.9 250 56.0
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.2e-66 256.5 318 46.9
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.2e-66 256.5 325 45.8
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.2e-66 256.5 323 45.5
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.9e-66 256.1 322 47.5
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.0e-66 255.4 324 43.8
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 6.5e-66 255.0 327 46.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 6.5e-66 255.0 323 46.1
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.5e-66 254.6 327 45.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.1e-65 254.2 310 47.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.5e-65 253.8 325 45.8
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.5e-65 253.1 327 45.6
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.5e-65 253.1 327 46.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 2.5e-65 253.1 353 43.9
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.2e-65 252.7 325 44.9
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.2e-65 252.3 324 46.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 4.2e-65 252.3 326 46.6
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 7.2e-65 251.5 322 46.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-64 250.8 317 43.8
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.2e-64 250.8 324 43.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.2e-64 250.8 324 44.8
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.6e-64 250.4 338 43.5
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.6e-64 250.4 324 44.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.1e-64 250.0 325 45.5
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.7e-64 249.6 335 46.0
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 6.1e-64 248.4 327 46.2
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 8.0e-64 248.1 245 55.9
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.0e-63 247.7 329 43.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.3e-63 246.5 336 44.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-63 246.5 306 49.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.2e-63 245.4 250 54.8
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 6.8e-63 245.0 259 51.0
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 8.8e-63 244.6 324 43.8
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.2e-62 244.2 250 54.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.0e-62 243.4 326 44.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.0e-62 243.4 326 47.5
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 2.0e-62 243.4 254 53.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.6e-62 243.0 314 43.6
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.4e-62 242.7 331 42.6
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 4.4e-62 242.3 310 46.8
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-62 241.1 265 51.3
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.7e-61 240.4 245 54.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.8e-60 236.9 323 44.3
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 9.1e-60 234.6 191 62.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.2e-59 234.2 257 49.4
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.5e-59 232.6 324 41.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.3e-58 229.9 315 43.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.1e-57 227.6 244 54.9
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.5e-57 227.3 251 51.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.3e-55 219.9 221 53.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.8e-55 218.4 320 44.1
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 5.7e-54 215.3 278 45.3
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-54 214.5 276 46.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.8e-53 213.0 331 40.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.7e-53 212.6 249 49.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.3e-53 211.8 276 46.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.3e-53 211.5 197 55.3
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 7.0e-52 208.4 266 43.6
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.5e-51 205.7 342 39.5
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 8.6e-50 201.4 342 38.6
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.5e-49 199.9 342 38.3
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.6e-48 197.2 203 54.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.3e-47 193.4 273 44.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.7e-45 187.2 270 41.9
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-44 184.5 245 45.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.1e-44 184.5 180 51.7
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 7.0e-44 181.8 240 40.8
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-43 180.6 240 44.6
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-41 174.1 293 39.9
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-41 173.7 187 52.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-41 173.7 187 52.4
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.3e-41 171.8 227 45.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.4e-39 167.5 186 47.8
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 3.1e-39 166.4 122 66.4
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 8.9e-39 164.9 125 65.6
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.0e-38 163.7 190 45.8
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.6e-38 163.3 242 41.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.9e-37 159.8 238 42.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 4.3e-33 146.0 296 34.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.1e-32 143.7 208 41.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 4.0e-31 139.4 161 50.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.6e-30 136.7 174 46.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-28 131.3 143 47.6
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.1e-28 131.3 177 41.8
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 7.1e-28 128.6 88 65.9
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 4.3e-25 119.4 213 37.1
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.6e-24 117.5 153 49.0
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-23 114.0 200 40.0
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 3.1e-23 113.2 155 41.9
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-22 110.5 183 38.3
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 3.4e-22 109.8 154 42.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.7e-21 107.5 175 38.9
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 4.2e-20 102.8 69 72.5
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.6e-19 100.9 88 59.1
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 7.8e-19 98.6 172 30.8
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.3e-18 97.8 93 53.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 8.7e-10 68.6 49 65.3
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 4.5e-06 56.2 228 27.2


User provided reference genes

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