Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 3208.3 1633 100.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 3043.1 1636 95.4
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2899.0 1640 90.5
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2897.1 1648 91.3
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2531.1 1639 78.6
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2521.9 1637 78.0
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2512.6 1639 77.9
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2511.5 1637 77.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2499.2 1639 77.8
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2496.5 1637 77.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2483.8 1640 77.7
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2481.4 1637 77.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2478.0 1639 76.9
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2476.0 1638 77.1
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1636 76.0
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1650 76.5
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1640 76.5
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2468.3 1650 76.3
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2451.4 1642 75.6
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2445.6 1637 75.2
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2419.8 1638 75.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2419.4 1643 75.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2418.3 1641 75.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2413.3 1637 75.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2402.5 1642 74.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2402.1 1623 74.9
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2389.4 1647 74.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2387.1 1636 74.1
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2380.5 1612 75.2
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2378.6 1642 74.1
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2374.0 1551 78.3
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2364.7 1663 72.4
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2354.3 1642 73.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2332.8 1640 73.1
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2324.7 1650 72.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2323.5 1640 73.0
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2322.0 1630 71.8
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2318.9 1640 72.8
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2315.4 1540 75.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2308.1 1949 63.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2281.5 1637 71.5
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2277.3 1614 71.1
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2273.8 1653 70.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2269.2 1627 70.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2263.4 1640 69.5
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2263.0 1657 70.4
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2261.1 1637 69.9
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2258.4 1647 70.3
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2257.6 1656 70.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2249.2 1689 68.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2247.2 1643 69.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2245.7 1620 70.6
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2241.8 1625 69.3
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2241.1 1626 71.4
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2240.7 1643 69.0
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2236.5 1620 70.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2236.5 1654 69.8
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1668 69.9
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2234.5 1653 70.0
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2222.2 1643 69.8
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2218.7 1650 69.8
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2211.8 1636 68.8
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2201.0 1648 68.4
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2194.5 1546 72.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2191.4 1470 75.5
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2182.5 1649 68.7
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2179.8 1641 68.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2178.7 1623 69.3
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2175.2 1640 68.4
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2174.8 1439 76.0
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2155.9 1649 67.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2153.3 1653 67.6
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2150.6 1653 67.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2140.2 1648 67.4
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2123.2 1648 66.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2122.8 1650 67.3
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2122.1 1444 75.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2118.2 1437 75.6
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2116.3 1649 66.9
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2114.7 1652 66.3
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2114.3 1971 58.6
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2114.3 1649 66.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2064.7 1588 67.1
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2042.3 1480 70.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2035.4 1641 64.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2034.2 1623 65.0
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2010.3 1639 63.5
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2007.3 1633 64.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1965.7 1621 63.8
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1953.7 1648 62.8
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1872.4 1224 77.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1866.7 1623 60.6
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1857.8 1629 60.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1711.0 1583 59.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1618.6 1128 73.3
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1612.4 1433 60.9
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1610.9 1245 67.3
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1457.6 1397 57.5
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1442.2 1004 73.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1406.7 1664 47.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1404.4 998 71.6
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1370.5 1242 57.2
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1339.7 1658 46.3
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1281.2 1631 44.2
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1160.2 1106 56.2
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1119.0 1640 44.5
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 5.6e-311 1071.6 759 72.9
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 4.1e-296 1022.3 644 78.4
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 4.9e-257 892.5 581 76.4
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 5.0e-254 882.5 620 69.5
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.6e-238 828.9 604 68.5
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 8.6e-238 828.6 589 69.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.2e-226 791.6 697 61.7
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.5e-221 774.6 631 66.9
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 4.3e-213 746.5 560 70.5
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 9.6e-197 692.2 510 69.4
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 4.1e-195 686.8 639 57.6
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.5e-194 684.9 514 67.9
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.8e-193 680.2 489 71.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 7.9e-191 672.5 553 64.7
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 3.1e-187 660.6 415 80.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.8e-182 644.8 476 68.5
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.5e-181 641.7 513 64.3
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.8e-163 581.6 585 56.2
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 2.9e-161 574.3 337 84.0
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.1e-160 572.4 483 59.6
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 4.6e-138 497.3 332 79.2
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.3e-129 469.2 318 77.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.6e-129 466.8 321 72.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.4e-118 431.8 387 58.7
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.5e-117 429.1 318 68.6
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.1e-112 412.9 316 67.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.8e-110 405.6 292 73.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.0e-110 404.4 246 78.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.1e-103 382.1 420 52.1
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.9e-102 377.1 366 56.3
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-95 355.9 251 68.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 2.9e-68 265.4 204 68.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.3e-60 240.0 141 84.4
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 4.2e-59 235.0 142 76.1
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.6e-58 231.9 141 78.0
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.4e-54 219.9 146 73.3
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.7e-50 205.7 209 56.0
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 6.3e-47 194.5 129 76.7
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 8.2e-47 194.1 142 71.1
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.0e-44 187.2 118 78.8
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 64.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 64.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 64.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 64.3
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 143 64.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-38 166.4 143 63.6
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 9.1e-38 164.1 143 63.6
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-37 163.7 143 63.6
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.7e-37 161.0 142 58.5
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 8.6e-36 157.5 96 79.2
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.5e-35 156.8 99 74.7
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.1e-34 152.9 88 83.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 2.8e-34 152.5 97 71.1
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-30 138.7 130 60.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-29 137.1 130 59.2
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.9e-27 129.8 91 69.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 4.4e-24 118.6 93 63.4
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 7.5e-24 117.9 93 62.4
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 7.3e-19 101.3 116 50.0
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.1e-17 97.4 113 53.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.5e-16 93.6 74 56.8
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 6.4e-15 88.2 55 78.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 7.0e-14 84.7 49 77.6
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 9.2e-14 84.3 65 67.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 6.6e-12 78.2 56 67.9
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.1e-11 77.4 153 41.2
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.8e-10 72.8 54 64.8
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 6.2e-10 71.6 54 68.5
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.3e-09 69.7 49 67.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 2.3e-09 69.7 48 64.6
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 1.1e-06 60.8 38 65.8
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 9.2e-06 57.8 59 49.2


User provided reference genes

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