Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 0.0e+00 1085.5 545 100.0
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 2.0e-292 1008.4 545 92.8
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 7.0e-285 983.4 545 90.3
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 9.2e-261 903.3 544 82.9
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.9e-221 772.7 544 69.3
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 3.2e-221 771.9 504 72.8
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.2e-220 770.0 543 68.3
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.1e-220 769.2 543 68.5
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.7e-219 764.2 520 71.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.5e-218 763.1 521 70.6
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.5e-218 763.1 550 67.5
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.5e-218 763.1 524 69.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.3e-218 761.9 556 67.1
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 4.8e-217 758.1 544 67.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.0e-215 752.7 523 69.8
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.7e-214 749.6 501 71.5
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.4e-213 746.5 512 70.1
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.9e-213 746.1 522 68.8
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 6.0e-212 741.1 544 67.1
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.0e-212 741.1 521 67.9
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 3.0e-211 738.8 520 69.4
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 8.7e-211 737.3 542 65.7
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 7.4e-210 734.2 519 68.6
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.8e-209 731.5 507 69.4
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 6.3e-209 731.1 531 67.2
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 8.2e-209 730.7 512 68.9
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.5e-207 726.5 522 67.2
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 2.6e-207 725.7 505 69.3
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 3.4e-207 725.3 504 68.1
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.4e-207 725.3 530 65.5
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 4.5e-207 724.9 504 69.0
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 5.9e-207 724.5 533 65.5
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.6e-207 724.2 519 68.8
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.7e-206 723.0 515 68.7
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 2.2e-206 722.6 517 67.1
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.5e-205 719.2 528 65.5
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 4.2e-205 718.4 504 67.3
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 4.2e-205 718.4 525 68.0
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 9.3e-205 717.2 539 63.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 9.3e-205 717.2 515 68.0
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 3.6e-204 715.3 504 67.9
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 4.6e-204 714.9 504 67.9
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 4.6e-204 714.9 505 68.9
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 4.6e-204 714.9 515 65.8
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 7.9e-204 714.1 540 63.1
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 6.7e-203 711.1 501 68.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 3.3e-202 708.8 527 65.5
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 3.3e-202 708.8 555 63.2
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 9.7e-202 707.2 506 68.0
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 2.8e-201 705.7 515 65.4
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 4.8e-201 704.9 543 64.5
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 6.3e-201 704.5 498 68.5
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-200 703.7 533 65.7
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.4e-200 702.6 508 68.3
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 3.1e-200 702.2 543 62.2
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 6.9e-200 701.0 541 62.8
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.1e-200 700.7 533 65.5
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 2.6e-199 699.1 533 65.3
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 2.6e-199 699.1 516 65.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.5e-199 698.4 513 64.7
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 5.9e-199 698.0 516 64.1
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 2.9e-198 695.7 487 69.2
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.1e-197 693.7 516 65.3
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.5e-197 691.4 522 65.9
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 9.4e-197 690.6 507 67.3
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.2e-196 690.3 510 65.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.7e-196 688.3 516 66.3
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-195 686.4 487 68.0
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 2.3e-195 686.0 509 65.8
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.5e-194 683.3 506 66.4
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 5.7e-194 681.4 516 65.9
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 9.7e-194 680.6 534 64.2
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 2.2e-193 679.5 507 65.9
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 2.4e-192 676.0 524 64.7
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 2.4e-192 676.0 526 64.6
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.4e-192 676.0 497 65.2
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 2.6e-191 672.5 522 62.8
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.3e-190 670.2 510 65.9
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.0e-187 660.6 500 63.8
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.4e-187 660.2 485 66.6
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.0e-187 659.1 539 59.7
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 7.4e-186 654.4 484 65.1
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 8.2e-185 651.0 511 61.8
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 2.9e-182 642.5 443 69.3
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 3.8e-182 642.1 497 64.4
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.2e-180 637.1 462 64.9
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 5.2e-179 631.7 511 61.4
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 9.7e-178 627.5 421 71.7
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 3.7e-169 599.0 418 68.7
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 5.4e-168 595.1 493 61.5
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.7e-166 590.1 608 50.8
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 5.0e-166 588.6 501 58.3
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.2e-162 577.4 428 64.7
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 1.1e-157 560.8 520 52.1
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 1.0e-155 554.3 378 70.1
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 4.4e-154 548.9 394 66.5
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.9e-150 535.8 549 49.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.9e-150 535.8 549 49.4
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 3.3e-149 532.7 419 61.8
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 6.2e-148 528.5 439 59.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 6.8e-147 525.0 472 54.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 4.4e-146 522.3 377 64.7
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.1e-143 513.5 383 67.6
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.0e-134 484.6 327 70.0
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 6.6e-134 481.9 376 62.5
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.1e-132 474.9 481 54.5
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.2e-131 472.2 522 49.8
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 4.7e-124 449.1 544 48.3
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 8.1e-124 448.4 486 50.2
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 7.1e-120 435.3 432 52.8
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 4.0e-115 419.5 281 70.5
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 6.3e-84 315.8 459 38.6
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.3e-76 289.3 238 59.7
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 2.4e-75 287.3 242 62.4
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 1.7e-65 254.6 189 67.2
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 5.5e-56 223.0 201 57.7
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 2.3e-46 191.0 140 64.3
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.0e-45 188.0 134 66.4
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.4e-45 187.2 121 70.2
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.0e-41 175.6 174 56.3
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 5.6e-40 169.9 118 67.8
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 5.2e-38 163.3 111 69.4
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.0e-37 161.4 497 27.6
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.2e-29 135.6 90 66.7
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 3.4e-29 134.0 133 57.1
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 6.4e-28 129.8 108 58.3
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 6.4e-28 129.8 108 58.3
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 6.4e-28 129.8 108 58.3
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.1e-22 112.5 76 68.4
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 6.8e-22 109.8 89 59.6
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.1e-19 99.8 74 63.5
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.2e-10 72.4 301 27.9
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 7.8e-10 69.7 305 26.6
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 1.3e-09 68.9 314 25.2
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 2.3e-09 68.2 302 24.8
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 3.0e-09 67.8 384 24.2
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 5.1e-09 67.0 301 27.6
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.6e-09 66.6 305 26.2
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 8.7e-09 66.2 301 27.2
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.1e-08 65.9 301 26.9
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.1e-08 65.9 261 24.9
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 1.5e-08 65.5 402 23.6
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 1.9e-08 65.1 301 26.2
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 1.9e-08 65.1 301 27.6
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 1.9e-08 65.1 301 27.6
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.5e-08 64.7 302 26.8
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.5e-08 64.7 311 25.4
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 3.3e-08 64.3 361 26.0
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 4.3e-08 63.9 361 26.0
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 4.3e-08 63.9 361 26.0
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 5.6e-08 63.5 424 25.9
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 9.6e-08 62.8 302 27.5
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.3e-07 62.4 328 25.0
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 1.3e-07 62.4 301 27.2
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 1.3e-07 62.4 301 27.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.3e-07 62.4 361 26.0
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.6e-07 62.0 301 25.9
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.6e-07 62.0 391 24.3
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.1e-07 61.6 301 26.6
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.1e-07 61.6 42 61.9
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 2.8e-07 61.2 311 25.7
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 2.8e-07 61.2 318 24.2
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 4.8e-07 60.5 294 26.2
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 4.8e-07 60.5 301 26.9
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 6.2e-07 60.1 365 25.8
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.1e-06 59.3 364 24.7
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 1.8e-06 58.5 427 25.1
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 1.8e-06 58.5 427 25.1
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 3.1e-06 57.8 301 26.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 9.0e-06 56.2 296 26.0


User provided reference genes

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