Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 5.5e-262 907.1 473 100.0
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.0e-245 850.1 471 94.5
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 3.4e-219 765.0 474 87.1
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.4e-167 593.6 478 67.4
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 2.6e-166 589.3 479 66.8
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.6e-163 579.3 504 63.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 3.0e-159 565.8 484 65.1
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 8.8e-159 564.3 507 64.7
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 3.3e-158 562.4 477 63.7
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.6e-155 553.5 478 63.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.5e-155 552.0 485 60.8
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 2.7e-152 542.7 492 61.8
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 6.1e-152 541.6 490 61.6
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.0e-151 540.8 481 60.1
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.0e-151 540.8 478 61.7
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.0e-151 539.3 475 61.1
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.0e-151 538.9 479 61.4
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 4.4e-150 535.4 479 61.2
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 4.4e-150 535.4 479 61.2
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 4.4e-150 535.4 492 60.8
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.2e-149 533.1 477 61.0
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 8.2e-149 531.2 491 60.5
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 8.2e-149 531.2 477 61.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 4.1e-148 528.9 477 60.6
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 7.0e-148 528.1 477 61.8
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 4.5e-147 525.4 490 58.4
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 5.9e-147 525.0 482 59.8
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.0e-146 524.2 474 60.1
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 1.7e-146 523.5 486 61.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 2.5e-145 519.6 489 60.9
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.2e-144 517.3 477 58.5
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 4.7e-144 515.4 470 60.0
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 8.0e-144 514.6 479 58.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.8e-143 513.5 483 59.6
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.2e-142 510.8 480 57.1
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.5e-142 510.4 477 58.1
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.7e-141 506.9 476 59.9
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 6.3e-141 505.0 479 57.8
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.1e-140 504.2 469 59.1
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.8e-140 503.4 479 57.6
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 9.1e-140 501.1 468 57.3
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.2e-139 500.7 487 57.7
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 1.2e-139 500.7 477 56.6
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 5.9e-139 498.4 478 57.7
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.5e-138 495.0 483 59.0
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.9e-137 493.4 478 58.8
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 4.2e-137 492.3 478 55.9
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 9.5e-137 491.1 490 56.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.6e-136 490.3 483 57.6
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.8e-136 489.6 471 56.3
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 3.6e-136 489.2 465 57.2
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 3.6e-136 489.2 473 56.9
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.0e-135 487.6 467 57.4
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.8e-135 486.9 497 55.5
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.8e-135 486.9 501 54.5
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 2.3e-135 486.5 463 56.6
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 2.3e-135 486.5 467 57.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.3e-135 486.5 481 57.0
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.2e-135 485.3 476 56.1
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 6.8e-135 485.0 483 56.7
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 8.9e-135 484.6 469 57.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.2e-134 484.2 475 55.4
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.2e-134 484.2 475 56.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.5e-134 483.8 477 56.8
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.0e-134 483.4 495 56.0
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 7.5e-134 481.5 393 66.9
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.7e-133 480.3 466 56.4
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.7e-133 480.3 469 56.7
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.7e-133 480.3 391 68.8
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.2e-133 479.9 470 56.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.8e-133 479.6 478 56.1
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.7e-133 479.2 478 55.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 8.3e-133 478.0 488 55.5
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.1e-132 477.6 475 55.8
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 4.1e-132 475.7 518 51.7
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 4.1e-132 475.7 473 55.8
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 5.4e-132 475.3 467 56.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.2e-131 474.2 480 55.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 4.5e-131 472.2 475 56.0
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 5.9e-131 471.9 394 62.7
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.0e-130 471.1 476 56.5
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.7e-130 470.3 475 55.2
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.1e-129 467.6 476 55.3
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.9e-129 466.8 464 56.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 5.6e-129 465.3 473 55.0
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 8.0e-128 461.5 497 51.7
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.4e-127 460.7 474 56.5
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.4e-127 460.7 456 55.7
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 3.0e-127 459.5 429 61.8
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.2e-127 458.8 479 53.0
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.5e-126 457.2 486 52.7
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 7.5e-126 454.9 520 51.7
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 3.9e-122 442.6 484 51.9
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 3.9e-122 442.6 484 53.3
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.2e-120 435.3 480 52.5
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.4e-119 434.1 476 51.1
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.1e-119 433.0 476 51.3
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 9.2e-116 421.4 425 56.9
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.8e-115 418.3 403 58.3
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.3e-114 416.8 477 52.0
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 6.2e-112 408.7 409 58.2
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.1e-112 408.3 403 57.8
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.4e-110 402.5 478 50.4
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 5.8e-94 349.0 500 45.6
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 5.8e-86 322.4 415 46.7
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 3.0e-82 310.1 475 41.7
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 2.4e-79 300.4 192 77.1
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.3e-77 294.7 390 46.9
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 8.4e-77 292.0 308 53.9
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 9.3e-76 288.5 477 40.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 7.4e-73 278.9 476 41.0
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 9.3e-68 261.9 303 50.8
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.9e-65 254.2 309 50.2
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 9.4e-60 235.3 243 51.4
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.5e-57 228.0 227 55.9
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 4.3e-57 226.5 341 40.8
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.7e-56 223.4 228 54.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.8e-53 213.4 228 50.4
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 3.2e-52 210.3 311 46.3
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 5.1e-50 203.0 333 37.5
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 2.5e-44 184.1 232 46.6
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 5.3e-39 166.4 151 57.0
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.4e-34 151.8 297 36.0
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 1.2e-33 148.7 181 53.0
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.7e-29 134.8 151 47.7
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 5.7e-25 119.8 111 58.6
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.1e-23 115.5 185 40.5
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 2.5e-20 104.4 94 54.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 6.3e-16 89.7 269 29.0
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.6e-14 85.1 74 56.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.7e-08 65.1 148 31.1
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.2e-08 64.7 228 28.1
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.9e-08 64.3 251 27.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.7e-08 63.9 155 31.0
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.7e-08 63.9 168 31.0
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 6.4e-08 63.2 134 32.8
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 6.4e-08 63.2 143 30.8
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.3e-08 62.8 185 29.2
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 8.3e-08 62.8 199 30.7
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 1.1e-07 62.4 107 28.0
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.1e-07 62.4 154 29.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-07 61.6 148 30.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.4e-07 61.2 178 28.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.4e-07 61.2 140 31.4
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.4e-07 61.2 180 28.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 3.2e-07 60.8 191 28.8
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 3.2e-07 60.8 179 29.1
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 7.0e-07 59.7 157 32.5
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.0e-07 59.7 208 27.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 9.2e-07 59.3 113 34.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 9.2e-07 59.3 191 27.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 9.2e-07 59.3 191 27.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.2e-07 59.3 158 31.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.2e-07 59.3 223 26.9
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.2e-06 58.9 159 30.2
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.6e-06 58.5 187 27.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-06 58.5 155 29.0
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.6e-06 58.5 128 30.5
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.0e-06 58.2 178 28.7
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.7e-06 57.8 155 31.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.7e-06 57.8 180 27.8
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 3.5e-06 57.4 186 28.5
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 3.5e-06 57.4 54 48.1
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 4.6e-06 57.0 172 28.5
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.6e-06 57.0 178 28.7
Lj3g0012882 Lotus japonicus HOM05D002747 ORTHO05D003069 4.6e-06 57.0 96 32.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 6.0e-06 56.6 155 29.7
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 6.0e-06 56.6 205 27.3
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.0e-06 56.6 184 27.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 6.0e-06 56.6 156 29.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 6.0e-06 56.6 158 27.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.0e-06 56.6 231 25.1
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 7.8e-06 56.2 46 52.2
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 7.8e-06 56.2 46 52.2
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 7.8e-06 56.2 46 52.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 7.8e-06 56.2 114 33.3
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 7.8e-06 56.2 195 26.2
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 7.8e-06 56.2 195 28.2


User provided reference genes

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