Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 5.3e-96 354.4 183 100.0
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 8.0e-92 340.5 183 95.1
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 8.6e-78 293.9 184 84.2
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.9e-65 252.3 183 73.2
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 5.8e-58 228.0 183 68.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 7.5e-58 227.6 180 69.4
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 7.5e-58 227.6 180 69.4
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 6.4e-57 224.6 185 68.6
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 8.3e-57 224.2 183 66.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.4e-56 223.4 183 67.8
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 3.5e-55 218.8 183 66.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 7.8e-55 217.6 183 65.0
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 3.9e-54 215.3 185 66.5
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 6.6e-54 214.5 180 67.2
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.5e-53 213.4 184 64.1
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.9e-53 213.0 183 66.1
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 9.5e-53 210.7 179 65.4
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.2e-52 210.3 184 63.6
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 6.2e-52 208.0 180 65.6
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 8.1e-52 207.6 182 62.1
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 8.1e-52 207.6 184 64.1
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 8.1e-52 207.6 184 65.2
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.1e-51 207.2 184 64.7
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.1e-51 207.2 178 66.3
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-51 206.8 183 64.5
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.4e-51 206.8 184 65.2
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-51 206.5 184 64.7
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.4e-51 206.1 178 65.2
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.4e-51 206.1 185 62.7
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 5.2e-51 204.9 188 63.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.2e-51 204.9 185 64.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 8.9e-51 204.1 189 61.4
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.2e-50 203.8 180 63.9
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 1.5e-50 203.4 182 63.2
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.6e-50 202.6 183 62.3
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.4e-50 202.2 182 63.2
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 4.4e-50 201.8 183 63.4
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.4e-50 201.8 184 64.1
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 4.4e-50 201.8 191 62.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 5.8e-50 201.4 182 62.6
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 9.9e-50 200.7 189 63.0
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 1.3e-49 200.3 180 65.0
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.3e-49 200.3 184 64.7
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.3e-49 200.3 179 65.4
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 3.8e-49 198.7 180 60.6
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 3.8e-49 198.7 178 60.7
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 3.8e-49 198.7 185 61.1
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 3.8e-49 198.7 179 62.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 4.9e-49 198.4 179 64.8
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.4e-49 197.6 186 62.4
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 8.4e-49 197.6 188 62.2
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.1e-48 197.2 174 64.9
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.4e-48 196.8 185 59.5
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.9e-48 196.4 185 60.5
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.4e-48 196.1 185 62.2
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.4e-48 196.1 192 58.9
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 2.4e-48 196.1 185 60.5
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 5.4e-48 194.9 180 61.1
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 6.0e-47 191.4 186 61.3
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.0e-46 190.7 184 64.1
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.0e-46 190.7 183 62.3
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 1.7e-46 189.9 186 60.2
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 2.3e-46 189.5 184 61.4
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-46 189.5 184 61.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.9e-46 188.7 188 60.1
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 5.1e-46 188.3 190 57.9
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 8.7e-46 187.6 185 60.0
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.1e-45 187.2 178 61.2
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.9e-45 186.4 183 61.2
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 3.3e-45 185.7 183 61.2
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 9.6e-45 184.1 184 61.4
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 9.6e-45 184.1 230 51.3
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 4.7e-44 181.8 183 60.1
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.1e-43 180.6 204 55.4
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.1e-43 180.6 183 58.5
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.4e-43 180.3 185 59.5
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.4e-43 180.3 185 59.5
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.4e-43 180.3 188 58.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.8e-43 179.9 183 59.0
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.8e-43 179.9 183 59.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 4.0e-43 178.7 185 59.5
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 5.2e-43 178.3 187 58.3
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 6.9e-43 177.9 183 59.0
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 9.0e-43 177.6 188 57.4
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 1.2e-42 177.2 119 77.3
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 1.5e-42 176.8 188 57.4
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 7.6e-42 174.5 186 56.5
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 9.9e-42 174.1 141 66.7
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 4.9e-41 171.8 185 56.2
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 2.4e-40 169.5 193 54.4
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.2e-40 169.1 196 55.6
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.6e-39 166.8 121 73.6
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 2.1e-39 166.4 186 54.8
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 3.5e-39 165.6 192 54.2
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.7e-38 163.3 131 67.9
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 6.6e-38 161.4 181 55.8
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 4.3e-37 158.7 129 65.9
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 2.8e-36 156.0 197 52.3
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.4e-35 153.7 196 51.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.4e-35 153.7 202 50.5
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.9e-35 151.4 160 56.9
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 9.0e-35 151.0 187 51.3
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.3e-30 137.1 135 57.8
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.0e-30 136.0 188 47.9
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 5.1e-30 135.2 184 47.3
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 4.3e-29 132.1 137 54.7
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 7.4e-29 131.3 185 45.9
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.3e-28 130.6 188 46.3
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.1e-28 129.8 125 57.6
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 8.1e-28 127.9 93 73.1
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 8.1e-28 127.9 127 59.1
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.1e-27 127.5 188 48.9
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 5.3e-27 125.2 122 57.4
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 6.9e-27 124.8 94 73.4
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-26 123.6 164 48.2
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 2.6e-26 122.9 159 47.8
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.5e-26 122.1 89 76.4
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 9.9e-26 120.9 248 37.5
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 9.9e-26 120.9 170 48.2
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 9.9e-26 120.9 119 57.1
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.1e-23 113.2 195 43.1
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 3.3e-21 105.9 140 47.1
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 9.0e-19 97.8 110 50.9
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 6.5e-17 91.7 94 56.4
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 7.1e-16 88.2 106 49.1
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.1e-15 86.7 75 56.0
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 9.7e-13 77.8 62 71.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.3e-12 77.4 68 61.8
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 6.3e-12 75.1 103 45.6
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.1e-11 72.8 147 39.5
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 5.3e-11 72.0 95 46.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 6.9e-11 71.6 124 42.7
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 4.5e-10 68.9 81 53.1
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.0e-09 65.5 81 49.4
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.0e-09 65.5 81 49.4
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 2.7e-07 59.7 91 45.1
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 1.0e-06 57.8 62 54.8
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-06 57.0 43 74.4
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 5.1e-06 55.5 87 41.4
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 6.7e-06 55.1 58 50.0


User provided reference genes

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