Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 8.8e-263 909.8 488 100.0
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 1.7e-237 825.9 464 94.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 7.3e-217 757.3 453 89.0
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 5.3e-183 644.8 372 91.9
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.2e-174 617.1 455 74.5
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 3.8e-173 612.1 452 74.3
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 5.5e-172 608.2 459 73.0
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.5e-169 600.1 457 70.0
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 2.5e-169 599.4 465 69.9
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 1.3e-168 597.0 451 72.3
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 5.9e-166 588.2 456 69.5
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 3.6e-163 578.9 458 70.7
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 4.3e-161 572.0 456 71.9
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.3e-160 570.5 455 68.1
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.4e-159 567.0 453 67.8
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 1.8e-159 566.6 470 67.4
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 3.8e-157 558.9 441 66.0
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.0e-154 550.8 458 67.9
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.0e-153 546.6 458 66.2
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.6e-153 546.2 458 67.5
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 7.4e-153 544.7 416 70.7
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.3e-152 541.6 458 66.8
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 1.1e-151 540.8 456 65.6
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 1.4e-151 540.4 456 67.3
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.4e-151 540.4 468 67.1
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 2.4e-151 539.7 477 63.5
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 4.1e-151 538.9 456 65.4
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.0e-150 536.6 455 66.8
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.0e-150 536.6 418 67.0
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.5e-150 535.8 396 75.3
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 7.7e-150 534.6 463 63.7
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 1.7e-149 533.5 456 64.9
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 3.8e-149 532.3 478 64.4
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 1.2e-147 527.3 452 64.4
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 4.7e-147 525.4 519 58.0
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 1.6e-139 500.4 455 62.4
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 6.1e-139 498.4 457 62.8
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.8e-138 496.9 473 62.2
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 3.0e-138 496.1 465 63.4
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.0e-138 496.1 474 62.2
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 4.0e-138 495.7 458 59.2
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 5.2e-138 495.4 399 67.4
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 6.8e-138 495.0 459 63.4
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.2e-137 494.2 460 61.3
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 1.5e-137 493.8 459 63.2
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.0e-137 493.4 473 62.4
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 3.4e-137 492.7 459 63.2
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 1.7e-136 490.3 467 62.5
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 2.8e-136 489.6 455 60.2
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 6.3e-136 488.4 464 60.1
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 8.3e-136 488.0 460 62.4
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 1.1e-135 487.6 467 61.7
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 5.4e-135 485.3 456 61.4
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 1.6e-134 483.8 454 58.8
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.5e-134 482.6 459 62.3
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 3.8e-133 479.2 311 78.5
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 6.5e-133 478.4 457 57.8
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 1.1e-132 477.6 454 59.9
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.5e-132 477.2 389 66.1
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.5e-132 477.2 470 62.1
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.1e-131 473.4 455 60.7
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 1.0e-130 471.1 457 58.0
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.2e-129 467.6 313 75.7
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.1e-127 461.1 486 55.3
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 4.5e-126 455.7 465 61.1
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 2.9e-125 453.0 464 58.0
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 2.9e-125 453.0 472 58.3
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 2.9e-125 453.0 472 58.3
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 5.0e-125 452.2 466 58.6
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 8.6e-125 451.4 458 56.3
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.1e-124 451.1 457 59.1
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.3e-124 449.1 419 58.5
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 3.6e-123 446.0 474 57.2
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 8.0e-123 444.9 470 59.6
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 1.0e-122 444.5 469 58.8
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 5.7e-121 438.7 444 56.1
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 1.3e-120 437.6 391 63.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 4.9e-120 435.6 457 57.3
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 8.3e-120 434.9 452 58.4
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.1e-119 434.5 441 55.1
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 5.0e-117 425.6 345 66.4
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.1e-114 416.4 345 64.1
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 8.9e-114 414.8 519 48.9
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 8.9e-114 414.8 452 54.4
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.4e-113 412.5 412 55.8
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 9.8e-113 411.4 250 81.2
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.9e-103 380.6 349 59.6
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 9.2e-103 378.3 380 57.4
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.1e-102 377.1 396 53.0
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 4.6e-102 375.9 393 54.2
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 1.8e-98 364.0 394 55.1
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.9e-92 344.0 435 51.0
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 1.8e-90 337.4 421 50.6
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 7.8e-86 322.0 276 61.6
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 5.1e-85 319.3 507 43.6
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 6.6e-85 318.9 374 50.3
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.7e-78 297.0 476 43.7
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 1.5e-76 291.2 459 39.7
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.5e-76 290.4 476 43.3
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.9e-68 264.2 181 73.5
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.5e-63 246.1 389 46.5
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.1e-58 231.9 217 60.8
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.4e-55 221.5 357 38.7
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.6e-51 208.0 308 41.2
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 1.7e-48 198.0 197 59.9
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.7e-35 154.8 185 45.4
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 6.1e-22 109.8 173 43.9
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 3.0e-21 107.5 182 42.9
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 6.8e-13 79.7 91 47.3
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 4.4e-12 77.0 103 47.6
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 2.2e-11 74.7 63 61.9
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.8e-10 71.6 42 76.2
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 7.8e-09 66.2 74 55.4


User provided reference genes

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