Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 2217.6 1134 100.0
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 2137.5 1135 96.3
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 2059.6 1139 93.1
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1932.9 1135 87.2
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1380.5 1137 64.5
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1379.4 1153 63.4
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1375.9 1143 63.7
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1370.1 1139 63.7
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1359.7 1152 63.1
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1358.2 1136 63.7
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1355.1 1154 62.2
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1353.2 1146 63.0
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1352.4 1137 62.7
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1352.4 1138 62.4
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1352.4 1142 63.0
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1349.0 1129 62.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1344.3 1142 62.4
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1341.6 1138 62.1
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1341.6 1137 62.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1336.2 1142 62.2
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1333.2 1129 62.9
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1330.9 1142 62.2
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1329.7 1142 62.1
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1327.8 1129 62.7
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1327.4 1151 61.1
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1327.0 1129 62.7
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1310.4 1144 61.5
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1307.4 1139 61.1
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1301.6 1146 60.6
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1297.7 1133 61.6
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1290.4 1139 60.7
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1288.9 1128 61.3
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1287.7 1133 61.4
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1282.7 1132 61.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1276.2 1143 58.8
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1270.0 1145 60.0
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1268.1 1149 58.3
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1267.3 1146 59.5
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1265.8 1132 60.1
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1261.5 1167 59.2
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1261.1 1131 59.9
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1252.7 1134 59.3
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1249.2 1134 58.6
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1241.5 1140 58.5
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1239.2 1137 59.1
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1237.6 1135 58.0
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1224.9 1135 58.0
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1222.6 1139 57.9
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1208.0 1141 57.2
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1204.1 1134 58.1
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1203.0 1140 56.4
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1198.7 1143 56.1
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1198.3 1134 57.4
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1195.6 1141 56.5
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1194.5 1140 55.9
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1194.1 1147 56.0
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1186.4 1146 56.2
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1018 60.6
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1174.5 1095 58.4
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1174.1 1136 55.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1167.9 1157 55.6
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1086 56.5
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1162.1 1144 55.3
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1161.7 1143 56.2
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1155.6 1145 54.7
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1152.9 1142 55.2
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1148.7 1143 54.9
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1148.7 1144 54.9
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1138 54.0
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1147.1 1146 54.7
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1145.6 1154 55.5
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1144.8 1135 56.3
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1142.5 1139 53.6
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1140.9 1124 54.8
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1139.0 1143 54.3
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1129.4 1146 53.6
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1128.6 1137 54.5
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1127.1 1137 54.5
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1127.1 1137 54.5
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1125.5 1143 53.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1121.7 1141 54.2
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1115.9 1137 53.9
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1113.6 1148 53.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1103.2 1135 53.3
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1088.9 1183 51.6
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1084.3 1029 56.6
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 6.7e-306 1054.3 1111 51.8
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.7e-296 1023.1 1139 49.5
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-282 976.1 1153 48.5
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 4.8e-280 968.4 1132 49.9
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.2e-270 937.2 906 56.4
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.5e-260 903.7 1141 45.7
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.8e-251 872.8 640 68.0
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.4e-250 870.5 759 58.8
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.8e-250 870.2 647 66.2
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 7.8e-238 828.2 1135 44.1
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.6e-219 767.3 645 61.2
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 4.0e-218 762.7 642 59.8
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 9.3e-207 724.9 1162 39.7
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 4.6e-206 722.6 1217 37.9
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.8e-202 710.7 611 63.3
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.8e-202 710.7 644 56.5
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 3.8e-200 703.0 1230 37.2
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.8e-197 694.1 561 63.3
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 2.2e-187 660.6 562 61.0
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 1.4e-178 631.3 636 51.3
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.5e-169 599.7 705 47.4
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.4e-156 557.0 493 63.5
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 6.3e-155 552.7 462 61.7
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.7e-153 547.4 518 56.6
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 2.8e-142 510.8 488 60.2
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 5.0e-83 313.9 1595 23.9
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.7e-78 297.7 522 37.0
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 6.7e-72 276.9 542 33.4
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.1e-71 276.2 263 54.4
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.5e-71 275.8 752 33.4
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-62 245.7 480 34.4
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 3.7e-62 244.6 581 31.2
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 5.0e-51 207.6 381 38.6
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-49 200.7 221 51.1
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 3.0e-48 198.4 515 31.1
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 9.8e-47 193.4 553 28.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 9.8e-39 166.8 248 41.9
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-37 162.5 663 25.9
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-37 162.5 663 25.9
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-36 159.5 258 39.5
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-35 156.0 175 46.3
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 6.6e-35 154.1 201 49.8
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-32 145.6 371 31.8
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 6.8e-32 144.1 201 46.3
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-25 123.2 121 56.2
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-25 122.9 141 46.1
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 3.1e-24 118.6 220 35.9
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.5e-23 116.3 103 53.4
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 242 32.6
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 242 32.6
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 7.6e-15 87.4 53 75.5
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 7.6e-15 87.4 153 32.7
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 2.9e-14 85.5 146 36.3
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-12 79.0 54 68.5
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 3.9e-11 75.1 58 60.3
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 3.1e-08 65.5 67 55.2
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 6.8e-08 64.3 136 31.6
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-06 60.1 80 40.0
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 6.4e-06 57.8 86 36.0


User provided reference genes

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