Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 1.8e-106 389.4 214 100.0
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 2.9e-101 372.1 214 96.3
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 9.3e-100 367.1 214 95.3
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 6.1e-83 311.2 214 84.6
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 3.1e-63 245.7 215 66.5
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 2.7e-62 242.7 216 63.9
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 2.7e-62 242.7 214 65.4
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 6.5e-61 238.0 214 65.0
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 6.5e-61 238.0 214 65.4
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 6.5e-61 238.0 212 64.6
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 8.5e-61 237.7 212 64.2
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 5.5e-60 235.0 214 64.5
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 1.4e-58 230.3 217 62.2
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.8e-58 229.9 213 62.4
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 6.8e-58 228.0 212 60.4
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 6.8e-58 228.0 213 60.6
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 6.8e-58 228.0 206 63.1
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 8.8e-58 227.6 214 59.8
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 1.5e-57 226.9 214 63.1
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 3.4e-57 225.7 221 61.5
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 7.5e-57 224.6 212 59.4
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 1.3e-56 223.8 216 59.3
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 1.7e-56 223.4 212 61.3
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 2.2e-56 223.0 220 62.3
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 2.8e-56 222.6 220 60.9
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 3.7e-56 222.2 212 59.4
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-55 219.9 215 62.3
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 4.1e-55 218.8 212 58.5
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 5.4e-55 218.4 212 58.5
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 9.1e-55 217.6 220 59.5
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 1.6e-54 216.9 212 59.0
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 2.0e-54 216.5 225 57.8
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 4.5e-54 215.3 225 59.1
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 1.3e-53 213.8 211 58.8
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.7e-53 213.4 212 59.4
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 2.2e-53 213.0 215 58.6
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 6.5e-53 211.5 228 56.1
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 8.5e-53 211.1 226 56.2
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 8.5e-53 211.1 205 58.0
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 8.5e-53 211.1 222 58.6
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 1.1e-52 210.7 226 54.9
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 1.1e-52 210.7 217 58.5
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 1.1e-52 210.7 225 55.6
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 2.5e-52 209.5 210 56.7
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 3.2e-52 209.1 217 59.9
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 4.2e-52 208.8 225 56.9
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 1.6e-51 206.8 217 57.6
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 1.6e-51 206.8 220 54.1
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.1e-51 206.5 225 55.1
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.7e-51 206.1 226 55.3
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 3.6e-51 205.7 217 58.1
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 3.6e-51 205.7 213 59.2
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 4.7e-51 205.3 213 61.0
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 1.4e-50 203.8 216 56.5
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 4.0e-50 202.2 215 56.7
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 4.0e-50 202.2 203 58.6
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 5.2e-50 201.8 212 59.0
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.8e-50 201.1 213 58.2
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 1.5e-49 200.3 210 56.2
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 3.4e-49 199.1 213 57.3
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 4.4e-49 198.7 214 57.5
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 4.4e-49 198.7 208 57.2
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 5.7e-49 198.4 211 59.7
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 5.7e-49 198.4 215 56.7
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 1.3e-48 197.2 175 62.9
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 1.3e-48 197.2 204 58.8
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.8e-48 196.1 204 57.8
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.9e-48 195.3 213 56.8
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 4.9e-48 195.3 213 56.3
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 6.3e-48 194.9 216 56.5
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 6.3e-48 194.9 216 56.5
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 8.3e-48 194.5 219 54.8
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 3.1e-47 192.6 218 56.9
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 5.4e-47 191.8 216 55.6
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 7.0e-47 191.4 204 56.9
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.6e-46 190.3 213 54.5
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 7.7e-46 188.0 213 55.9
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 1.0e-45 187.6 211 54.5
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.9e-44 183.3 234 51.7
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 4.3e-44 182.2 216 54.2
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 5.6e-44 181.8 139 69.8
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 9.5e-44 181.0 219 51.6
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 3.6e-43 179.1 224 51.8
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 4.7e-43 178.7 198 56.6
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 6.1e-43 178.3 120 78.3
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 8.0e-43 177.9 129 74.4
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 5.2e-42 175.3 204 55.9
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.2e-41 174.1 213 54.5
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.2e-41 174.1 213 54.5
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 1.5e-41 173.7 132 71.2
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 3.4e-41 172.6 210 53.3
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 7.5e-41 171.4 210 52.9
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 7.5e-41 171.4 210 52.9
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.2e-40 169.9 156 62.2
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 4.9e-40 168.7 151 59.6
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 1.4e-39 167.2 208 47.1
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 1.6e-38 163.7 213 48.4
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 8.6e-37 157.9 121 70.2
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 7.3e-36 154.8 116 68.1
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.2e-35 151.8 212 47.6
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.9e-31 140.2 91 78.0
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 1.6e-30 137.1 88 78.4
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.5e-28 129.8 209 45.0
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 4.3e-28 129.0 81 79.0
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 7.3e-28 128.3 174 48.3
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.8e-27 126.3 174 48.3
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 1.4e-26 124.0 210 41.9
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-26 123.6 211 45.5
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 1.4e-23 114.0 211 42.2
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 1.9e-23 113.6 212 40.6
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 1.4e-18 97.4 133 45.1
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.8e-18 97.1 214 37.4
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-15 87.8 147 42.2
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.6e-13 78.6 46 87.0
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 2.1e-11 73.6 45 77.8
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.8e-11 73.2 44 75.0
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 3.6e-11 72.8 132 42.4
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 1.1e-10 71.2 151 39.7
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.4e-10 70.1 132 40.9
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.1e-10 69.7 154 40.9
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 5.8e-09 65.5 37 81.1
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 2.7e-06 56.6 127 33.1
Atru.chr5.867 Acer truncatum HOM05D006141 ORTHO05D007670 4.6e-06 55.8 89 42.7


User provided reference genes

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