Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.5e-87 326.2 175 100.0
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 3.6e-81 305.1 173 93.6
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.2e-65 253.4 167 86.2
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 3.1e-53 212.2 175 73.1
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 3.7e-38 162.2 171 59.6
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 5.4e-37 158.3 178 56.7
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 4.6e-36 155.2 173 58.4
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 4.3e-34 148.7 179 58.1
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 3.4e-31 139.0 189 50.8
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 4.4e-31 138.7 175 54.3
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 2.9e-30 136.0 177 54.8
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.9e-30 135.2 170 53.5
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.1e-29 134.0 170 53.5
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 1.1e-29 134.0 113 69.0
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.1e-29 134.0 174 52.3
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.4e-29 133.7 178 50.6
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.9e-29 133.3 179 50.3
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 2.4e-29 132.9 178 50.0
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.2e-29 132.5 169 51.5
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 3.2e-29 132.5 178 52.8
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 5.4e-29 131.7 118 63.6
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 5.4e-29 131.7 178 53.4
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 7.0e-29 131.3 170 54.1
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 2.0e-28 129.8 181 49.7
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 2.7e-28 129.4 180 50.0
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 2.7e-28 129.4 179 52.5
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 2.7e-28 129.4 175 48.6
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 2.7e-28 129.4 177 53.1
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.7e-28 129.4 179 51.4
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 6.0e-28 128.3 177 52.5
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.3e-27 127.1 175 51.4
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 1.3e-27 127.1 112 66.1
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.3e-27 126.3 177 52.0
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 3.9e-27 125.6 177 48.6
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 8.6e-27 124.4 182 50.5
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 8.6e-27 124.4 182 50.5
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 8.6e-27 124.4 171 49.7
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 1.1e-26 124.0 182 50.5
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 1.5e-26 123.6 171 50.9
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 1.5e-26 123.6 168 48.8
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 1.9e-26 123.2 172 51.2
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 2.5e-26 122.9 168 48.2
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 3.3e-26 122.5 187 48.1
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 4.3e-26 122.1 185 46.5
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 7.3e-26 121.3 130 56.2
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 9.5e-26 120.9 103 66.0
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 9.5e-26 120.9 172 51.7
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 9.5e-26 120.9 112 62.5
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.2e-25 120.6 118 61.9
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 1.2e-25 120.6 171 49.1
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 1.6e-25 120.2 174 50.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 2.1e-25 119.8 172 50.6
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 3.6e-25 119.0 127 52.8
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 8.1e-25 117.9 158 55.1
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 1.1e-24 117.5 171 49.1
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.4e-24 117.1 177 51.4
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.8e-24 116.7 110 59.1
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 2.3e-24 116.3 174 50.0
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 3.1e-24 115.9 175 46.3
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 4.0e-24 115.5 172 48.8
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 4.0e-24 115.5 171 51.5
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 5.2e-24 115.2 172 49.4
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 5.2e-24 115.2 150 54.7
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 6.8e-24 114.8 168 48.2
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 6.8e-24 114.8 182 50.0
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 2.0e-23 113.2 179 49.7
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 2.0e-23 113.2 136 54.4
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 4.4e-23 112.1 169 49.7
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 7.5e-23 111.3 162 48.1
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 7.5e-23 111.3 179 50.3
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 9.8e-23 110.9 117 59.0
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 9.8e-23 110.9 118 57.6
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 1.3e-22 110.5 108 62.0
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 1.7e-22 110.2 163 47.2
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 2.9e-22 109.4 180 46.7
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 2.9e-22 109.4 181 47.0
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 3.7e-22 109.0 174 47.7
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 3.7e-22 109.0 176 47.7
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 4.9e-22 108.6 171 49.1
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 4.9e-22 108.6 171 49.7
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 4.9e-22 108.6 169 46.7
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 6.4e-22 108.2 158 50.0
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.1e-21 107.5 176 44.9
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 7.1e-21 104.8 156 49.4
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.6e-20 103.6 170 46.5
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.6e-20 103.6 171 46.2
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 2.7e-20 102.8 161 44.7
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 2.7e-20 102.8 97 60.8
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 6.0e-20 101.7 191 44.5
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 6.0e-20 101.7 98 64.3
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 6.0e-20 101.7 165 45.5
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 1.0e-19 100.9 181 43.6
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 1.0e-19 100.9 162 46.3
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 2.3e-19 99.8 158 45.6
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.1e-18 97.4 79 64.6
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.9e-18 96.7 97 60.8
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 1.9e-18 96.7 96 59.4
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 4.3e-18 95.5 90 61.1
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 3.6e-17 92.4 124 54.0
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 2.3e-16 89.7 118 47.5
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 3.1e-16 89.4 99 57.6
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 5.2e-16 88.6 65 69.2
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.5e-15 87.0 184 40.8
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 7.6e-15 84.7 142 49.3
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 3.7e-14 82.4 154 45.5
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 8.4e-14 81.3 73 67.1
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 3.0e-11 72.8 166 39.8
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 3.0e-11 72.8 175 34.3
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 3.9e-11 72.4 79 57.0
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 4.3e-10 68.9 79 57.0
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 2.1e-09 66.6 102 42.2
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 2.6e-07 59.7 69 55.1
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 4.4e-07 58.9 81 43.2


User provided reference genes

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