Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 4.2e-91 338.2 192 100.0
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 3.0e-89 332.0 192 98.4
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 1.2e-85 320.1 192 93.8
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.8e-79 298.9 192 88.0
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 3.9e-73 278.5 184 89.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 4.8e-63 245.0 189 77.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-62 243.0 191 73.8
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.8e-62 243.0 192 71.9
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.3e-60 236.9 192 71.9
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 3.8e-60 235.3 192 67.2
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 7.2e-59 231.1 203 70.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.2e-58 230.3 194 70.6
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.6e-58 228.4 192 72.9
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 6.1e-58 228.0 195 69.2
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 1.0e-57 227.3 192 70.8
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.4e-57 226.9 197 71.1
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.3e-57 226.1 197 70.6
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.1e-57 224.9 196 68.9
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 4.3e-56 221.9 191 71.7
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 7.4e-56 221.1 197 70.1
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 9.7e-56 220.7 197 66.5
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 2.8e-55 219.2 197 70.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.7e-55 218.8 192 69.8
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 4.8e-55 218.4 192 66.7
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 8.2e-55 217.6 191 70.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.4e-54 216.9 192 66.1
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.1e-54 215.7 192 67.7
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 3.1e-54 215.7 190 69.5
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-53 213.8 191 66.5
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.5e-53 213.4 192 67.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.4e-53 212.2 192 67.2
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 5.9e-53 211.5 195 68.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 5.9e-53 211.5 193 67.4
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.3e-52 210.3 190 67.4
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 2.2e-52 209.5 192 66.7
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.5e-52 208.0 192 67.2
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.5e-52 207.6 188 70.7
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-51 207.2 192 66.1
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.4e-51 206.8 194 66.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.5e-51 206.1 195 64.6
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 3.2e-51 205.7 194 67.5
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.2e-51 205.3 195 66.2
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 4.2e-51 205.3 182 68.7
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.2e-51 205.3 193 66.3
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 5.5e-51 204.9 191 65.4
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 7.2e-51 204.5 194 64.9
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.4e-51 204.1 192 67.2
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 2.7e-50 202.6 198 65.2
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.0e-49 200.7 189 68.8
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.8e-49 199.9 193 64.2
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 3.0e-49 199.1 191 63.9
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 5.1e-49 198.4 195 65.6
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.5e-48 196.8 194 63.9
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.0e-48 196.4 192 64.1
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.3e-48 195.7 192 63.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 5.7e-48 194.9 201 61.2
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 5.7e-48 194.9 192 63.5
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 5.7e-48 194.9 194 64.9
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.7e-48 194.9 193 65.8
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 7.4e-48 194.5 191 62.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.2e-47 193.0 188 66.5
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.8e-47 192.6 192 63.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 3.7e-47 192.2 191 61.3
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 4.1e-46 188.7 196 62.2
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 7.0e-46 188.0 191 62.8
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 3.4e-45 185.7 186 63.4
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 3.4e-45 185.7 192 63.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 7.7e-45 184.5 191 61.8
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.0e-44 184.1 191 62.3
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.0e-44 184.1 191 60.7
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.4e-43 180.3 193 61.7
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-43 180.3 193 60.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 7.2e-43 177.9 196 61.7
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.2e-42 177.2 191 59.2
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.6e-42 176.8 191 60.7
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.6e-42 176.8 191 60.7
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.6e-42 176.8 191 60.7
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.7e-42 175.3 193 59.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.0e-41 174.1 193 61.1
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.0e-41 174.1 191 59.2
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-41 173.7 190 60.5
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.0e-41 172.6 191 59.7
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.0e-41 172.6 191 59.7
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.0e-41 172.6 189 58.2
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.2e-41 171.8 191 59.2
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 3.3e-40 169.1 167 60.5
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 7.4e-40 167.9 192 59.4
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 7.4e-40 167.9 190 62.1
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 9.7e-40 167.5 204 57.8
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.7e-39 166.8 191 60.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 2.2e-39 166.4 192 58.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.7e-39 165.6 191 61.3
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 6.3e-39 164.9 142 70.4
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 8.2e-39 164.5 193 59.1
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.1e-38 164.1 193 58.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 3.1e-38 162.5 191 58.6
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 3.1e-38 162.5 190 52.1
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 7.0e-38 161.4 193 58.0
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 7.0e-38 161.4 193 59.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 9.1e-38 161.0 193 57.5
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 1.6e-37 160.2 191 58.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 1.6e-37 160.2 191 58.6
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.6e-37 159.5 135 72.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 2.6e-37 159.5 189 56.6
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-37 159.1 167 56.9
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.7e-36 156.8 167 56.9
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 3.8e-36 155.6 189 48.7
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 6.5e-36 154.8 191 51.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 6.5e-36 154.8 184 52.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.5e-35 153.7 135 71.1
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.9e-35 153.3 185 51.4
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 6.7e-33 144.8 190 51.6
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 6.7e-33 144.8 158 62.0
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.2e-32 144.1 113 63.7
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 2.8e-31 139.4 191 53.4
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 6.3e-31 138.3 148 60.1
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.1e-30 136.0 154 60.4
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 5.3e-30 135.2 154 61.0
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.2e-29 134.0 116 60.3
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-29 133.7 135 59.3
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 4.5e-29 132.1 139 57.6
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.5e-27 127.1 122 56.6
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-24 116.7 119 64.7
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 3.7e-23 112.5 207 48.8
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 3.5e-21 105.9 103 59.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.1e-19 100.9 186 46.2
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.6e-18 95.9 135 47.4
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 6.1e-18 95.1 126 45.2
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.5e-16 90.5 105 61.9
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 9.8e-16 87.8 88 53.4
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 6.3e-15 85.1 117 49.6
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.4e-14 83.2 131 51.1
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 3.3e-11 72.8 67 58.2
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 1.2e-10 70.9 59 81.4
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 3.6e-10 69.3 179 43.0
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.7e-07 60.5 73 47.9


User provided reference genes

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