Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.1e-63 245.0 126 100.0
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.9e-61 238.4 126 94.4
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 3.3e-60 235.0 126 94.4
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 9.5e-52 206.8 126 85.7
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.5e-41 172.9 126 71.4
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 5.2e-26 121.3 120 54.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 5.2e-26 121.3 120 54.2
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 2.2e-24 115.9 120 51.7
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 9.3e-23 110.5 105 57.1
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 3.5e-22 108.6 120 48.3
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.0e-21 107.1 105 53.3
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 3.0e-21 105.5 118 51.7
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.9e-21 105.1 106 50.0
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.7e-21 104.0 105 50.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.1e-20 103.6 105 51.4
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.5e-20 102.4 105 50.5
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.5e-20 102.4 105 50.5
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.5e-20 102.4 116 48.3
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 4.3e-20 101.7 105 52.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.6e-20 101.3 105 49.5
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 5.6e-20 101.3 105 52.4
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 7.3e-20 100.9 112 50.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 3.6e-19 98.6 110 46.4
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 4.8e-19 98.2 112 49.1
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 6.2e-19 97.8 108 51.9
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 6.2e-19 97.8 109 49.5
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.1e-19 97.4 117 49.6
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-18 96.3 112 48.2
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.8e-18 96.3 113 46.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.4e-18 95.9 126 43.7
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.1e-18 95.5 112 48.2
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 5.3e-18 94.7 113 48.7
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.9e-18 94.4 117 48.7
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 9.0e-18 94.0 112 47.3
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 9.0e-18 94.0 112 47.3
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 9.0e-18 94.0 117 47.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.2e-17 93.6 106 49.1
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.2e-17 93.6 105 46.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 2.0e-17 92.8 124 44.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.0e-17 92.8 106 46.2
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.0e-17 92.8 106 50.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.6e-17 92.4 123 45.5
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 3.4e-17 92.0 106 46.2
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.4e-17 92.0 105 46.7
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 5.8e-17 91.3 112 46.4
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.3e-16 90.1 112 43.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.3e-16 90.1 112 43.8
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 2.2e-16 89.4 122 39.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.9e-16 89.0 101 47.5
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.9e-16 89.0 101 47.5
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 3.8e-16 88.6 112 45.5
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.8e-16 88.6 101 47.5
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 4.9e-16 88.2 112 42.9
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 4.9e-16 88.2 106 47.2
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 4.9e-16 88.2 106 43.4
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.9e-16 88.2 120 43.3
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 6.4e-16 87.8 120 40.0
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 6.4e-16 87.8 119 40.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 6.4e-16 87.8 108 45.4
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 8.4e-16 87.4 109 44.0
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.1e-15 87.0 109 43.1
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.1e-15 87.0 108 47.2
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-15 86.7 109 43.1
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 2.4e-15 85.9 106 43.4
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 4.2e-15 85.1 123 45.5
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 4.2e-15 85.1 116 44.8
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 7.1e-15 84.3 121 40.5
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.1e-15 84.3 131 40.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 9.3e-15 84.0 108 46.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 9.3e-15 84.0 104 44.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-14 83.6 108 44.4
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.2e-14 83.6 107 44.9
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.6e-14 83.2 111 45.9
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.6e-14 83.2 103 43.7
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 2.1e-14 82.8 109 40.4
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.1e-14 82.8 107 46.7
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.6e-14 81.6 102 46.1
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 6.0e-14 81.3 119 40.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 7.9e-14 80.9 107 43.9
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 7.9e-14 80.9 110 41.8
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.9e-14 80.9 71 54.9
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.7e-13 79.7 110 44.5
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.3e-13 79.3 110 38.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 2.3e-13 79.3 111 42.3
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.9e-13 78.6 116 39.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 3.9e-13 78.6 105 41.9
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 5.6e-12 74.7 98 42.9
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 5.6e-12 74.7 111 36.0
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 7.4e-12 74.3 60 65.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 2.1e-11 72.8 109 34.9
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 4.8e-11 71.6 112 34.8
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 6.2e-11 71.2 111 39.6
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 8.1e-11 70.9 120 40.8
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.1e-10 70.5 112 34.8
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.8e-10 69.7 102 40.2
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 2.4e-10 69.3 123 32.5
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 5.3e-10 68.2 106 36.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 6.9e-10 67.8 105 36.2
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.6e-09 65.9 101 39.6
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 4.9e-08 61.6 89 38.2
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.4e-07 59.3 105 34.3
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 2.4e-07 59.3 105 34.3


User provided reference genes

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