Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 4.8e-249 864.0 424 100.0
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 9.4e-245 849.7 424 97.9
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.5e-229 798.5 424 89.9
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.8e-214 748.0 424 83.5
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.3e-198 695.7 413 80.4
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 4.7e-188 661.4 428 73.6
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 1.1e-187 660.2 428 71.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.2e-186 656.8 428 72.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.9e-185 652.1 417 73.1
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.9e-184 649.4 431 71.7
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.4e-184 649.0 429 72.7
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 4.1e-184 648.3 429 70.6
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 7.1e-184 647.5 427 71.2
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.7e-182 642.9 430 71.4
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 2.3e-182 642.5 431 71.5
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.3e-182 642.5 429 72.7
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 5.1e-182 641.3 431 70.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 5.1e-182 641.3 415 73.0
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.5e-181 639.8 433 70.7
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.9e-181 639.4 433 70.7
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.3e-181 638.6 433 70.2
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 9.6e-181 637.1 433 70.9
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.6e-180 636.3 428 71.5
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 6.2e-180 634.4 430 71.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 6.2e-180 634.4 424 70.3
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.4e-179 633.3 409 72.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 2.4e-179 632.5 418 70.6
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 6.9e-179 630.9 437 68.6
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 9.0e-179 630.6 412 71.8
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 9.0e-179 630.6 430 70.5
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.5e-178 629.8 434 68.9
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.6e-178 629.0 429 69.2
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 9.9e-178 627.1 429 69.2
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.7e-177 626.3 430 69.5
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 3.8e-177 625.2 425 70.1
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.4e-176 622.5 419 71.6
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 4.2e-176 621.7 427 70.3
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 7.1e-176 620.9 428 70.3
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 9.3e-176 620.5 424 70.0
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.1e-175 619.4 461 65.7
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.3e-174 615.9 431 68.7
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 2.3e-174 615.9 443 68.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.9e-174 615.1 449 66.4
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 8.7e-174 614.0 431 69.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.3e-173 612.1 439 66.1
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.3e-173 611.7 415 68.2
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 5.6e-173 611.3 419 66.8
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.3e-172 610.1 430 67.2
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.6e-172 609.8 431 68.2
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.1e-172 609.4 415 67.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 6.2e-172 607.8 428 65.9
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.4e-171 606.7 432 68.5
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.4e-171 605.9 409 68.0
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 2.4e-171 605.9 414 68.8
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.4e-171 605.9 406 68.7
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 4.0e-171 605.1 425 67.1
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.5e-170 603.2 407 69.8
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-170 601.3 415 67.2
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 7.6e-170 600.9 426 65.7
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 7.6e-170 600.9 434 67.7
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 7.6e-170 600.9 410 68.0
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 9.9e-170 600.5 425 66.4
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 9.9e-170 600.5 415 67.7
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 9.9e-170 600.5 415 67.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.7e-169 599.7 429 66.0
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.7e-169 599.7 428 66.6
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.7e-169 599.7 401 68.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.7e-169 599.7 428 66.6
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 2.2e-169 599.4 425 66.1
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.9e-169 599.0 423 66.7
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.9e-169 599.0 418 66.3
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-169 598.6 429 65.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 4.9e-169 598.2 429 66.0
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.4e-169 597.8 418 66.0
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 8.4e-169 597.4 425 66.1
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 8.4e-169 597.4 426 66.4
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 8.4e-169 597.4 425 66.8
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.4e-168 596.7 430 67.2
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 7.1e-168 594.3 416 67.5
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 2.1e-167 592.8 419 66.6
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.7e-167 592.4 425 65.2
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.5e-167 592.0 401 69.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.8e-166 589.7 406 66.5
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.8e-166 589.7 435 65.7
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 6.7e-166 587.8 426 65.7
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 4.3e-165 585.1 424 64.9
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.6e-165 584.7 425 65.9
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.6e-165 584.7 425 65.9
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.6e-164 583.2 432 63.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.7e-164 582.0 430 65.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.9e-162 573.9 427 65.1
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.7e-161 573.2 434 63.8
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 3.8e-161 572.0 415 66.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.4e-161 570.9 417 61.6
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.4e-160 570.1 432 65.3
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 5.5e-160 568.2 417 61.2
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.5e-157 560.1 432 63.2
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.6e-157 558.1 422 64.7
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 9.6e-157 557.4 429 63.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.4e-155 553.5 411 64.5
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.4e-154 548.9 431 60.6
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.0e-153 547.4 432 59.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 6.5e-153 544.7 415 62.9
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.9e-152 543.1 424 61.1
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.5e-151 538.9 420 59.3
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 5.1e-150 535.0 428 61.4
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 8.7e-150 534.3 409 61.1
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 3.1e-147 525.8 415 59.3
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.9e-146 521.5 432 60.0
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.7e-145 520.0 425 58.4
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 3.8e-145 518.8 430 55.6
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.0e-145 518.5 426 58.9
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.4e-144 516.9 430 55.1
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 7.9e-143 511.1 430 54.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 8.2e-140 501.1 354 67.5
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-139 500.0 446 54.9
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.6e-135 485.7 417 54.2
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.8e-134 483.4 393 56.5
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.6e-127 460.3 400 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 9.7e-117 424.5 428 49.3
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 9.1e-115 417.9 307 65.5
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.6e-111 406.0 424 52.8
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.8e-110 401.7 424 52.1
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.6e-109 399.8 422 46.7
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 2.2e-108 396.7 406 49.3
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.4e-107 394.0 294 60.5
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.3e-105 387.5 265 68.3
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 2.9e-105 386.3 409 45.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-104 384.0 343 52.8
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 5.8e-93 345.5 429 43.1
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.8e-86 323.9 256 65.6
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.9e-84 316.6 288 52.8
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 6.6e-81 305.4 223 64.1
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 6.6e-81 305.4 239 60.7
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.9e-56 224.2 152 67.1
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.1e-55 218.8 306 39.5
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-53 214.2 161 63.4
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.8e-47 193.7 134 61.2
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 9.3e-43 178.7 127 59.1
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.6e-42 177.9 112 71.4
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 2.7e-42 177.2 148 58.1
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.6e-40 169.5 159 57.9
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 7.6e-37 159.1 125 60.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.9e-35 154.5 403 27.5
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.9e-34 149.1 211 43.1
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-30 138.7 156 46.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-20 103.6 78 62.8
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-18 97.8 66 69.7
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.7e-18 97.4 67 68.7
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 6.1e-18 96.3 100 45.0
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-17 93.6 79 54.4
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 6.7e-17 92.8 92 50.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.0e-16 91.3 79 49.4
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.3e-14 83.2 68 50.0
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.2e-13 82.0 88 40.9
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.2e-12 77.8 61 59.0
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-12 76.3 62 58.1
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.1e-11 75.5 57 64.9
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 5.5e-11 73.2 60 61.7
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 3.0e-09 67.4 131 32.1
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 3.3e-08 63.9 60 53.3
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 7.4e-08 62.8 55 52.7
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.3e-07 62.0 72 36.1
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.7e-07 60.5 78 44.9
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 5.3e-06 56.6 44 47.7


User provided reference genes

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