Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 7.2e-312 1073.2 524 100.0
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 2.6e-236 822.0 498 83.1
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 1.5e-228 796.2 498 80.9
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 1.4e-205 719.9 495 73.3
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 4.1e-149 532.3 498 53.4
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 2.0e-148 530.0 498 53.0
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 2.3e-147 526.6 495 54.3
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 4.7e-145 518.8 497 53.5
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 5.2e-144 515.4 495 53.7
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 3.4e-143 512.7 499 52.1
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 7.5e-143 511.5 496 52.2
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 3.7e-142 509.2 507 51.7
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 1.2e-140 504.2 495 53.1
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 5.6e-138 495.4 499 51.3
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 3.6e-137 492.7 498 51.0
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 1.8e-136 490.3 496 51.2
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 3.0e-136 489.6 492 49.6
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 4.4e-135 485.7 500 52.0
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 4.3e-130 469.2 498 50.4
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 5.6e-130 468.8 524 48.3
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 6.2e-129 465.3 498 47.4
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 1.1e-128 464.5 499 47.7
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 1.8e-128 463.8 501 49.7
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 5.2e-128 462.2 511 49.1
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 1.3e-126 457.6 500 47.0
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 2.2e-126 456.8 501 48.5
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 4.9e-126 455.7 500 48.8
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.1e-125 454.5 501 48.7
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 2.4e-125 453.4 499 49.1
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 3.2e-125 453.0 498 46.6
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 9.2e-125 451.4 499 46.7
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 1.2e-124 451.1 501 48.7
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 2.0e-124 450.3 504 49.4
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 4.6e-124 449.1 502 45.6
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 1.0e-123 448.0 498 46.2
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 1.3e-123 447.6 478 48.3
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 3.0e-123 446.4 501 46.7
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.9e-123 446.0 504 48.8
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 1.5e-122 444.1 496 47.2
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 2.5e-122 443.4 498 47.6
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.3e-122 443.0 499 49.1
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 3.3e-122 443.0 502 45.2
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 4.3e-122 442.6 499 45.3
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 4.3e-122 442.6 502 45.6
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 4.3e-122 442.6 502 46.0
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 9.5e-122 441.4 500 48.2
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 9.5e-122 441.4 504 46.6
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 2.8e-121 439.9 498 45.0
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 8.1e-121 438.3 533 43.9
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 8.1e-121 438.3 500 45.8
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 3.1e-120 436.4 502 44.2
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 4.0e-120 436.0 501 46.3
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 5.2e-120 435.6 502 44.4
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 8.9e-120 434.9 490 47.1
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 4.4e-119 432.6 501 45.3
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 5.8e-119 432.2 498 45.6
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 5.8e-119 432.2 499 47.1
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 3.7e-118 429.5 500 46.4
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 1.1e-117 427.9 498 45.2
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 1.1e-117 427.9 499 44.7
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 2.4e-117 426.8 501 44.3
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 3.2e-117 426.4 502 45.0
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 5.4e-117 425.6 498 44.6
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 7.1e-117 425.2 499 44.5
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 1.2e-116 424.5 476 47.3
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 1.2e-116 424.5 500 44.8
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 1.5e-114 417.5 498 44.0
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 1.9e-114 417.2 508 45.3
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 9.5e-114 414.8 511 43.2
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 2.0e-111 407.1 500 43.4
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 2.6e-111 406.8 420 49.8
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 2.4e-109 400.2 511 43.4
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 2.7e-108 396.7 511 43.4
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 6.6e-107 392.1 496 43.8
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 6.6e-107 392.1 501 42.3
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 6.6e-107 392.1 512 42.2
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 1.2e-103 381.3 456 44.3
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 6.4e-102 375.6 500 42.2
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 1.4e-101 374.4 571 38.5
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 3.2e-101 373.2 532 41.2
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 4.2e-101 372.9 482 41.7
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 1.6e-100 370.9 500 42.6
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 3.5e-100 369.8 497 41.6
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 7.8e-100 368.6 522 41.0
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 1.1e-98 364.8 521 41.5
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 9.0e-96 355.1 513 40.7
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 4.9e-94 349.4 507 41.4
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 1.2e-92 344.7 500 40.0
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 1.6e-92 344.4 358 49.4
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 4.6e-84 316.2 504 39.5
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.5e-82 311.2 518 37.3
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 3.3e-82 310.1 395 42.3
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 5.6e-82 309.3 506 36.2
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 2.8e-81 307.0 389 43.2
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 1.1e-80 305.1 519 35.3
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 2.9e-78 297.0 524 36.1
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 5.1e-75 286.2 519 35.6
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 2.2e-73 280.8 488 36.7
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 3.4e-71 273.5 411 38.9
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 7.2e-69 265.8 511 32.7
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 7.9e-68 262.3 536 34.0
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 5.5e-61 239.6 229 52.0
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 1.2e-60 238.4 399 35.8
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 4.5e-55 219.9 426 33.3
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 3.8e-54 216.9 338 39.3
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 8.5e-46 189.1 191 48.2
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 7.7e-39 166.0 368 32.1
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 2.6e-34 151.0 309 32.0
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 9.1e-32 142.5 346 28.0
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 3.3e-29 134.0 504 25.2
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 4.7e-28 130.2 135 47.4
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 5.2e-27 126.7 239 31.8
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 9.8e-26 122.5 117 48.7
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 1.4e-24 118.6 266 32.3
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 1.0e-19 102.4 206 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 1.1e-16 92.4 494 22.9
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 2.4e-16 91.3 167 35.3
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 1.7e-14 85.1 93 48.4
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 3.3e-13 80.9 299 24.7
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 3.3e-13 80.9 76 50.0
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 7.8e-07 59.7 57 57.9


User provided reference genes

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