Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 1.5e-84 316.2 165 100.0
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 1.3e-80 303.1 165 95.8
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 4.5e-78 294.7 165 92.7
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 6.4e-64 247.7 167 80.2
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 1.7e-48 196.4 165 66.1
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 4.9e-48 194.9 153 66.7
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 1.1e-47 193.7 129 78.3
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 7.1e-47 191.0 162 66.0
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 1.6e-46 189.9 163 63.8
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 2.7e-46 189.1 163 63.8
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 4.6e-46 188.3 163 63.2
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 4.6e-46 188.3 163 63.8
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 7.8e-46 187.6 129 76.0
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 1.3e-45 186.8 164 64.0
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 8.6e-45 184.1 160 62.5
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 2.1e-43 179.5 120 75.8
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 2.8e-43 179.1 118 76.3
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 8.1e-43 177.6 134 67.9
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 1.1e-42 177.2 131 72.5
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 1.1e-42 177.2 122 73.0
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 1.1e-42 177.2 127 71.7
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 1.4e-42 176.8 119 73.9
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 1.4e-42 176.8 119 73.9
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.8e-42 176.4 118 74.6
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 3.1e-42 175.6 133 66.9
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 3.1e-42 175.6 130 70.0
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 3.1e-42 175.6 126 72.2
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 5.2e-42 174.9 145 62.1
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 6.8e-42 174.5 129 69.8
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 6.8e-42 174.5 167 63.5
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 1.2e-41 173.7 120 69.2
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 1.2e-41 173.7 164 59.8
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.6e-41 172.6 130 64.6
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 3.4e-41 172.2 145 61.4
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 7.6e-41 171.0 119 71.4
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 9.9e-41 170.6 132 65.9
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.7e-40 169.9 114 73.7
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 2.2e-40 169.5 162 59.3
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 8.4e-40 167.5 121 71.9
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 1.4e-39 166.8 117 70.9
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 2.4e-39 166.0 119 68.1
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 3.2e-39 165.6 121 71.1
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 4.1e-39 165.2 122 70.5
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 7.1e-39 164.5 165 58.2
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 7.1e-39 164.5 114 73.7
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 9.2e-39 164.1 143 65.7
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 9.2e-39 164.1 143 65.7
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 9.2e-39 164.1 143 65.7
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 1.6e-38 163.3 126 67.5
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 1.6e-38 163.3 143 65.7
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 1.6e-38 163.3 143 65.7
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 1.6e-38 163.3 167 56.3
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 2.7e-38 162.5 166 57.2
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 2.7e-38 162.5 168 61.3
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 4.6e-38 161.8 115 73.0
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 4.6e-38 161.8 164 56.7
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 6.0e-38 161.4 116 74.1
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 6.0e-38 161.4 136 62.5
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 7.8e-38 161.0 120 70.8
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 7.8e-38 161.0 162 55.6
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 7.8e-38 161.0 134 61.2
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 1.0e-37 160.6 164 57.9
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 2.3e-37 159.5 171 58.5
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 3.9e-37 158.7 121 66.1
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 5.1e-37 158.3 123 65.9
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 1.5e-36 156.8 101 74.3
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 1.9e-36 156.4 150 56.7
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 2.5e-36 156.0 141 62.4
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 3.3e-36 155.6 126 63.5
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 4.3e-36 155.2 123 66.7
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 4.3e-36 155.2 116 66.4
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 2.1e-35 152.9 126 61.9
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 2.4e-34 149.4 132 62.1
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 2.4e-34 149.4 133 62.4
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.5e-33 146.7 165 53.3
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 2.2e-32 142.9 95 71.6
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 1.1e-31 140.6 137 58.4
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 3.2e-31 139.0 164 53.7
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 3.2e-31 139.0 142 53.5
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 3.2e-31 139.0 114 63.2
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 7.1e-31 137.9 139 59.7
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 6.0e-30 134.8 109 67.9
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 6.0e-30 134.8 100 69.0
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 3.9e-29 132.1 86 77.9
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 7.3e-28 127.9 102 62.7
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 3.6e-27 125.6 121 56.2
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 4.8e-27 125.2 106 65.1
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 3.1e-26 122.5 117 53.8
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 9.0e-26 120.9 120 56.7
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 2.6e-25 119.4 103 63.1
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 2.4e-23 112.8 89 61.8
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.6e-22 110.2 71 67.6
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 1.0e-21 107.5 132 42.4
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 6.7e-21 104.8 131 43.5
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 1.9e-20 103.2 105 52.4
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 3.3e-20 102.4 199 40.2
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 2.0e-17 93.2 115 45.2
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 3.8e-16 89.0 135 40.7
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 1.1e-15 87.4 131 43.5
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 3.5e-14 82.4 146 34.9
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 1.8e-13 80.1 68 63.2
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 3.9e-13 79.0 120 40.0
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 3.9e-13 79.0 116 40.5
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 7.4e-12 74.7 113 44.2
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 1.5e-09 67.0 141 36.9
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 3.2e-07 59.3 70 57.1


User provided reference genes

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