Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 5.2e-279 963.8 494 100.0
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.7e-253 879.0 478 94.4
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.3e-249 864.8 495 90.7
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.9e-245 850.9 495 89.5
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 6.0e-243 844.0 486 88.9
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.3e-240 836.3 494 85.6
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.7e-200 701.8 483 79.9
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 7.2e-172 607.8 501 63.7
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.1e-171 606.3 498 63.3
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.2e-169 600.5 497 62.4
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.9e-168 595.1 491 63.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.2e-166 590.5 500 60.4
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.8e-165 585.5 523 60.8
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.0e-165 585.1 498 61.6
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 6.6e-165 584.7 501 61.9
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.1e-164 583.9 497 61.8
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.1e-164 583.9 505 62.2
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.3e-164 582.0 507 60.6
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 7.3e-164 581.3 507 60.6
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 7.3e-164 581.3 507 60.6
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 2.8e-163 579.3 514 59.9
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.0e-162 577.4 507 60.4
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.0e-162 577.4 495 59.4
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.5e-161 573.5 497 59.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 3.7e-160 568.9 438 67.8
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.4e-159 567.0 477 61.0
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.8e-159 566.6 597 52.8
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.0e-157 560.8 499 59.5
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.0e-157 560.8 503 58.6
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.3e-157 560.5 503 58.4
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 3.0e-157 559.3 494 59.3
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.9e-157 558.9 496 58.5
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.9e-157 558.9 498 59.4
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 8.6e-157 557.8 516 57.4
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.9e-156 556.6 499 58.9
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.3e-156 555.8 496 58.5
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.5e-156 554.3 503 58.3
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.2e-155 553.9 497 60.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.8e-155 552.7 501 58.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 4.7e-155 552.0 504 58.9
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.8e-154 550.1 517 57.3
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.1e-154 549.3 499 58.5
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 6.8e-154 548.1 441 62.4
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.6e-153 546.2 507 57.8
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 4.4e-153 545.4 503 57.9
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 5.8e-153 545.0 496 57.9
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 6.4e-152 541.6 503 58.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 6.4e-152 541.6 496 57.7
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-151 540.8 515 56.1
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.9e-151 540.0 505 57.4
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.9e-151 540.0 505 57.4
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.9e-151 540.0 496 57.7
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.4e-151 538.5 493 57.2
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.2e-150 537.3 501 58.3
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.0e-150 536.6 492 58.1
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 3.5e-150 535.8 496 57.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.0e-149 534.3 498 58.0
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.3e-149 533.9 499 57.1
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 5.0e-149 531.9 505 57.2
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.0e-149 531.9 495 57.2
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-148 530.8 499 57.5
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 4.3e-148 528.9 507 55.6
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 7.3e-148 528.1 507 56.2
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.2e-147 527.3 442 60.2
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.1e-147 526.6 498 57.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 4.7e-147 525.4 506 56.3
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 6.2e-147 525.0 505 56.4
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 6.2e-147 525.0 494 57.1
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.1e-146 524.2 489 57.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.4e-146 523.9 504 55.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 5.8e-145 518.5 505 55.4
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 7.5e-145 518.1 490 56.1
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 7.5e-145 518.1 499 55.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 9.9e-145 517.7 499 55.3
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.9e-143 513.5 440 59.8
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 4.1e-143 512.3 441 60.5
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 7.1e-143 511.5 465 58.3
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 9.2e-143 511.1 501 55.9
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.6e-142 510.4 482 55.8
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.5e-142 509.2 496 56.7
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.6e-142 508.8 504 55.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 6.0e-142 508.4 490 56.3
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.0e-141 507.7 497 55.3
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 6.6e-141 505.0 441 59.9
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.1e-140 504.2 495 55.6
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.7e-139 498.8 434 58.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.1e-138 497.7 495 52.3
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.1e-138 496.1 434 59.0
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 5.2e-138 495.4 437 59.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 2.0e-137 493.4 492 55.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 9.9e-137 491.1 464 56.0
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 8.4e-136 488.0 506 54.2
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.1e-135 487.6 421 57.5
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.9e-135 486.9 502 54.6
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 9.2e-135 484.6 501 54.3
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 9.2e-135 484.6 449 56.6
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.6e-134 483.8 499 54.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.1e-134 483.4 507 53.8
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 4.6e-134 482.3 466 56.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.0e-134 481.9 442 57.9
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.3e-132 476.1 442 57.0
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.1e-131 473.4 503 50.3
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 8.1e-131 471.5 496 51.2
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.5e-129 467.2 412 59.0
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.3e-128 464.2 468 54.7
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.2e-128 463.4 490 51.2
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.1e-127 461.1 467 52.0
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.4e-127 460.7 498 53.2
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 4.2e-127 459.1 521 49.7
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 5.6e-124 448.7 426 56.8
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 2.6e-121 439.9 505 47.7
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 2.2e-120 436.8 447 52.1
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 4.0e-114 416.0 497 49.5
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 4.5e-113 412.5 419 52.0
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.1e-111 405.2 323 60.1
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.2e-110 404.4 417 55.4
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.1e-107 393.7 399 54.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.5e-105 386.0 385 54.8
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.0e-101 374.8 415 53.0
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 8.2e-99 365.2 308 58.8
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 5.9e-97 359.0 492 44.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 3.2e-95 353.2 332 54.8
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.6e-94 350.9 446 45.5
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 9.7e-92 341.7 363 53.4
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 8.2e-91 338.6 433 46.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 3.1e-90 336.7 307 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 9.1e-90 335.1 485 41.9
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.1e-82 311.6 467 41.3
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 5.2e-77 292.7 312 51.6
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.7e-75 286.6 291 51.2
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 5.3e-74 282.7 206 65.5
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 7.7e-73 278.9 237 56.5
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.0e-69 268.5 451 37.5
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 5.9e-65 252.7 189 64.0
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.5e-63 247.3 316 48.7
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 7.0e-58 229.2 230 55.2
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-50 204.5 192 55.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 5.0e-48 196.4 132 68.2
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.2e-42 177.2 423 31.9
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.5e-39 168.3 316 32.9
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 5.1e-32 143.3 128 56.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 3.2e-26 124.0 198 35.9
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.4e-26 123.2 83 66.3
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 7.1e-26 122.9 70 75.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.5e-25 120.6 80 62.5
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.2e-17 95.5 127 52.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.0e-16 92.4 51 76.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.3e-16 91.3 59 67.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-15 89.0 59 66.1
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.6e-14 85.1 148 37.8
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.6e-12 77.8 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 4.9e-11 73.6 43 72.1
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 5.6e-07 60.1 389 24.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 4.8e-06 57.0 33 66.7


User provided reference genes

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