Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 2.3e-72 275.4 136 100.0
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 2.1e-65 252.3 136 91.2
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.1e-61 240.0 134 87.3
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 4.7e-57 224.6 134 82.1
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 3.4e-47 191.8 135 70.4
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 3.4e-47 191.8 136 69.9
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 7.6e-47 190.7 136 69.9
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.3e-46 189.9 136 68.4
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 2.2e-46 189.1 136 69.9
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 3.8e-46 188.3 134 69.4
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 8.4e-46 187.2 136 67.6
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 4.2e-45 184.9 134 68.7
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 5.4e-45 184.5 137 67.9
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 7.1e-45 184.1 132 67.4
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 1.6e-44 183.0 137 66.4
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 1.6e-44 183.0 134 67.2
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 1.6e-44 183.0 137 67.2
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 6.0e-44 181.0 141 66.0
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 7.9e-44 180.6 137 67.9
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 1.3e-43 179.9 136 62.5
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 2.3e-43 179.1 135 63.0
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 2.3e-43 179.1 135 65.9
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 3.9e-43 178.3 138 65.2
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 3.9e-43 178.3 136 63.2
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 3.9e-43 178.3 133 64.7
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 5.1e-43 177.9 135 61.5
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 5.1e-43 177.9 132 67.4
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 5.1e-43 177.9 134 62.7
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 6.7e-43 177.6 135 62.2
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 6.7e-43 177.6 135 62.2
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 1.1e-42 176.8 138 61.6
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 1.5e-42 176.4 135 61.5
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 1.5e-42 176.4 135 61.5
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 1.5e-42 176.4 135 61.5
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 1.9e-42 176.0 137 62.0
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 1.9e-42 176.0 136 66.9
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 1.9e-42 176.0 135 61.5
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 3.3e-42 175.3 142 64.1
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 3.3e-42 175.3 129 63.6
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 3.3e-42 175.3 138 62.3
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 7.4e-42 174.1 134 63.4
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 1.3e-41 173.3 133 65.4
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.3e-41 173.3 99 85.9
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 1.6e-41 172.9 142 59.9
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 3.7e-41 171.8 129 67.4
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 6.2e-41 171.0 136 65.4
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 8.1e-41 170.6 135 60.7
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 4.0e-40 168.3 138 61.6
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 5.3e-40 167.9 133 57.9
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 1.2e-39 166.8 138 61.6
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 1.2e-39 166.8 139 59.7
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 1.2e-39 166.8 133 57.1
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 1.5e-39 166.4 129 65.9
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 2.6e-39 165.6 137 62.0
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 3.4e-39 165.2 144 61.8
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 4.5e-39 164.9 138 58.7
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 1.7e-38 162.9 138 56.5
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 1.7e-38 162.9 133 56.4
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 2.2e-38 162.5 135 60.7
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 2.9e-38 162.2 136 58.8
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 2.9e-38 162.2 133 57.9
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 3.8e-38 161.8 142 55.6
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 4.9e-38 161.4 138 59.4
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 6.4e-38 161.0 131 62.6
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 1.9e-37 159.5 132 62.1
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 3.2e-37 158.7 133 61.7
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 9.3e-37 157.1 158 53.2
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 1.2e-36 156.8 138 56.5
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 1.2e-36 156.8 138 56.5
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 1.6e-36 156.4 138 55.8
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 2.1e-36 156.0 169 52.1
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 3.5e-36 155.2 137 59.1
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 4.6e-36 154.8 138 57.2
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 5.1e-35 151.4 145 55.9
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 5.1e-35 151.4 142 55.6
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 6.7e-35 151.0 138 54.3
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 3.3e-34 148.7 138 56.5
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 9.6e-34 147.1 133 57.9
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 1.6e-33 146.4 106 66.0
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.6e-33 146.4 133 57.9
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 1.8e-32 142.9 98 66.3
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 1.0e-27 127.1 116 58.6
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 3.9e-27 125.2 113 59.3
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 8.2e-25 117.5 142 49.3
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 2.4e-24 115.9 134 52.2
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.1e-24 115.2 136 46.3
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.1e-24 115.2 136 46.3
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 6.9e-24 114.4 140 46.4
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 5.9e-23 111.3 132 46.2
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 2.2e-22 109.4 110 52.7
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 2.9e-22 109.0 95 61.1
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 5.0e-22 108.2 101 58.4
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 5.0e-22 108.2 85 58.8
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 2.5e-21 105.9 118 48.3
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.2e-20 103.6 147 44.2
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 2.7e-20 102.4 100 57.0
arahy.Tifrunner.gnm1.ann1.9UEW9D Arachis hypogaea HOM05D007233 ORTHO05D009043 1.4e-19 100.1 122 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 1.8e-16 89.7 88 47.7
Sc12g0003860 Simmondsia chinensis HOM05D007233 ORTHO05D009043 6.9e-16 87.8 80 57.5
Oeu035529.3 Olea europaea HOM05D007233 ORTHO05D009043 1.9e-13 79.7 79 54.4
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 4.2e-13 78.6 81 54.3
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 9.4e-13 77.4 92 47.8
Duzib168G0428 Durio zibethinus HOM05D007233 ORTHO05D009043 2.6e-10 69.3 101 43.6
arahy.Tifrunner.gnm1.ann1.3ZRX2Z Arachis hypogaea HOM05D007233 ORTHO05D009043 1.7e-09 66.6 66 53.0
Potri.002G256001 Populus trichocarpa HOM05D007233 ORTHO05D009043 3.4e-07 58.9 40 75.0


User provided reference genes

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