Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 5.3e-62 240.7 113 100.0
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 5.2e-57 224.2 113 91.2
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 2.0e-53 212.2 113 85.8
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 7.7e-53 210.3 115 85.2
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 8.2e-47 190.3 102 82.4
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 7.0e-46 187.2 113 75.2
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 7.7e-45 183.7 102 78.4
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.7e-44 182.6 112 73.2
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 5.0e-44 181.0 105 76.2
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 8.5e-44 180.3 99 78.8
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 1.1e-43 179.9 107 75.7
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.5e-43 179.5 96 83.3
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 2.5e-43 178.7 105 77.1
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.5e-43 177.6 107 72.9
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 7.2e-43 177.2 105 76.2
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 9.4e-43 176.8 95 82.1
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 6.1e-42 174.1 96 79.2
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 8.0e-42 173.7 93 82.8
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 3.0e-41 171.8 92 79.3
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 4.0e-41 171.4 96 80.2
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 8.8e-41 170.2 107 70.1
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 1.2e-40 169.9 99 75.8
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 2.6e-40 168.7 100 72.0
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 4.4e-40 167.9 103 72.8
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 5.7e-40 167.5 100 71.0
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 7.5e-40 167.2 127 62.2
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 9.8e-40 166.8 107 71.0
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.2e-39 165.6 91 80.2
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 2.8e-39 165.2 101 72.3
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 3.7e-39 164.9 113 62.8
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 8.3e-39 163.7 104 67.3
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 1.1e-38 163.3 110 67.3
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 1.1e-38 163.3 104 66.3
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 1.4e-38 162.9 105 67.6
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 1.8e-38 162.5 110 67.3
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 2.4e-38 162.2 108 66.7
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 2.4e-38 162.2 110 66.4
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 3.1e-38 161.8 90 76.7
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 5.4e-38 161.0 104 69.2
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 5.4e-38 161.0 101 67.3
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 5.4e-38 161.0 103 69.9
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 7.0e-38 160.6 110 65.5
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 7.0e-38 160.6 107 65.4
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 9.1e-38 160.2 107 65.4
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 1.2e-37 159.8 96 70.8
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-37 159.5 97 72.2
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.6e-37 159.5 97 72.2
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 2.0e-37 159.1 105 65.7
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 2.7e-37 158.7 96 71.9
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 2.7e-37 158.7 103 68.0
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 3.5e-37 158.3 96 71.9
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.9e-37 157.5 97 72.2
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 1.0e-36 156.8 92 73.9
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.0e-36 156.8 110 65.5
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 3.8e-36 154.8 90 75.6
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 3.8e-36 154.8 107 64.5
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 3.8e-36 154.8 96 70.8
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 5.0e-36 154.5 98 70.4
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-35 153.3 97 70.1
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.2e-35 151.8 97 69.1
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 5.5e-35 151.0 107 62.6
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 7.2e-35 150.6 105 65.7
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.6e-34 148.3 112 63.4
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 4.7e-34 147.9 104 63.5
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 6.1e-34 147.5 173 45.7
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 2.3e-33 145.6 87 71.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.2e-33 144.4 97 67.0
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 8.8e-33 143.7 94 69.1
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.2e-32 143.3 106 60.4
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.2e-32 143.3 106 60.4
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 1.5e-32 142.9 106 60.4
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 2.0e-32 142.5 105 61.0
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 2.6e-32 142.1 104 61.5
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 3.4e-32 141.7 106 61.3
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 4.4e-32 141.4 87 70.1
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 7.5e-32 140.6 106 60.4
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 9.8e-32 140.2 104 61.5
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.7e-31 139.4 88 70.5
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 2.2e-31 139.0 107 60.7
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 2.2e-31 139.0 101 58.4
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 3.7e-31 138.3 104 58.7
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 6.3e-31 137.5 108 58.3
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 8.3e-31 137.1 113 55.8
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 1.1e-30 136.7 102 60.8
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.1e-30 136.7 104 59.6
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 3.1e-30 135.2 104 57.7
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.1e-30 134.8 75 77.3
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.1e-30 134.8 75 78.7
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 9.2e-30 133.7 79 72.2
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 2.0e-29 132.5 127 52.0
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 5.9e-29 131.0 77 75.3
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 7.8e-29 130.6 78 73.1
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 7.8e-29 130.6 99 60.6
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 1.0e-28 130.2 88 62.5
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.0e-28 130.2 96 59.4
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 1.7e-28 129.4 123 50.4
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 1.7e-28 129.4 92 58.7
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 6.6e-28 127.5 139 45.3
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 8.6e-28 127.1 122 50.0
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.1e-27 126.7 123 51.2
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.1e-27 126.7 123 51.2
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 1.1e-27 126.7 128 49.2
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 1.5e-27 126.3 121 49.6
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 2.5e-27 125.6 107 54.2
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 2.5e-27 125.6 74 73.0
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 7.3e-27 124.0 104 55.8
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.1e-26 122.5 103 52.4
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 8.0e-26 120.6 75 69.3
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 4.0e-25 118.2 70 72.9
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 8.9e-25 117.1 78 67.9
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 1.2e-24 116.7 75 66.7
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 2.6e-24 115.5 75 64.0
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 4.4e-24 114.8 78 62.8
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 4.4e-24 114.8 70 68.6
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 1.3e-23 113.2 69 68.1
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 6.4e-23 110.9 74 70.3
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 6.4e-23 110.9 73 69.9
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 3.2e-22 108.6 69 69.6
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 3.9e-20 101.7 77 61.0
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 5.6e-19 97.8 127 42.5
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 3.1e-17 92.0 92 43.5
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 2.6e-16 89.0 67 59.7
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 1.3e-15 86.7 47 72.3
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 1.5e-11 73.2 40 77.5
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 5.6e-11 71.2 40 77.5
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 1.2e-10 70.1 53 56.6
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 8.1e-10 67.4 52 63.5


User provided reference genes

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