Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 1.2e-310 1068.9 522 100.0
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 1.4e-271 939.1 509 90.0
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 1.5e-268 929.1 511 89.4
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 1.5e-228 796.2 450 86.2
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 2.9e-203 712.2 512 68.6
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 2.9e-203 712.2 505 69.3
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 1.9e-202 709.5 510 69.4
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 3.1e-197 692.2 523 66.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.3e-197 691.4 512 66.6
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 2.0e-196 689.5 512 66.4
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 5.8e-196 688.0 510 66.9
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 2.9e-195 685.6 521 66.6
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 3.8e-195 685.3 514 66.5
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.9e-194 682.9 507 66.1
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 2.7e-193 679.1 506 64.8
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 7.9e-193 677.6 520 64.6
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.3e-192 676.8 511 65.0
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.3e-192 676.0 511 65.0
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 3.0e-192 675.6 530 64.7
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 8.7e-192 674.1 513 66.5
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.3e-191 672.2 511 65.2
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 2.1e-190 669.5 520 64.4
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 4.8e-190 668.3 507 65.7
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 8.1e-190 667.5 511 64.8
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 1.4e-189 666.8 507 64.5
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 2.6e-188 662.5 509 64.0
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 4.5e-188 661.8 506 65.6
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 7.6e-188 661.0 492 66.5
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 3.8e-187 658.7 487 66.9
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 4.2e-186 655.2 526 63.5
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 9.3e-186 654.1 508 63.2
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 9.3e-186 654.1 510 63.1
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 3.9e-184 648.7 521 62.8
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 5.1e-184 648.3 518 62.2
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 1.1e-183 647.1 524 62.4
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 4.3e-183 645.2 511 63.2
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 2.1e-182 642.9 454 69.2
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 1.1e-181 640.6 524 61.5
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 1.1e-181 640.6 511 61.6
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.4e-181 640.2 505 61.4
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 1.4e-181 640.2 512 62.5
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 4.0e-181 638.6 511 62.4
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 1.2e-180 637.1 484 65.1
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 1.5e-180 636.7 503 61.6
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 2.6e-180 636.0 504 63.3
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 7.6e-180 634.4 512 62.9
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 6.5e-179 631.3 502 61.6
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 4.2e-178 628.6 505 61.2
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 4.2e-178 628.6 488 64.8
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 3.5e-177 625.5 448 69.6
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 4.6e-177 625.2 620 53.4
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 1.0e-176 624.0 503 62.2
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 1.8e-176 623.2 502 60.8
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 1.8e-176 623.2 510 61.0
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 2.3e-176 622.9 505 60.6
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 3.0e-176 622.5 505 60.2
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 3.0e-176 622.5 488 64.8
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 6.7e-176 621.3 453 67.8
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 6.7e-176 621.3 518 59.7
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 8.7e-176 620.9 500 62.2
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 1.5e-175 620.2 505 59.8
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 5.7e-175 618.2 505 60.0
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 7.4e-175 617.8 505 59.8
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 1.6e-174 616.7 508 59.1
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.4e-173 613.6 528 58.1
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 3.6e-169 599.0 522 58.4
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 6.1e-169 598.2 445 65.2
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 7.9e-169 597.8 450 65.3
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 3.0e-168 595.9 449 64.8
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 8.2e-166 587.8 595 51.1
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 2.9e-163 579.3 556 55.0
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 6.5e-163 578.2 413 68.0
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 4.2e-162 575.5 379 71.5
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 1.4e-160 570.5 493 59.6
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 2.6e-159 566.2 591 53.1
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 4.4e-159 565.5 514 56.2
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.7e-158 563.5 516 57.4
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.2e-158 563.1 517 57.1
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 2.6e-156 556.2 538 53.5
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.2e-148 530.8 546 51.8
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.3e-147 527.3 417 62.1
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 1.1e-146 524.2 378 67.5
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 9.4e-146 521.2 419 63.5
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 8.0e-145 518.1 397 65.7
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.0e-144 517.7 415 61.9
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 2.0e-143 513.5 454 58.1
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 2.4e-141 506.5 398 64.3
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 2.2e-139 500.0 430 59.5
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.9e-138 496.9 366 63.7
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.7e-134 483.8 561 45.5
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 1.4e-133 480.7 379 60.4
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 1.8e-133 480.3 553 47.2
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 5.0e-131 472.2 443 55.3
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 9.5e-130 468.0 396 60.9
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.8e-128 463.8 397 59.9
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 5.7e-127 458.8 406 58.9
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.4e-125 453.4 442 54.8
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 1.2e-124 451.1 505 47.7
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 1.1e-114 417.9 524 43.7
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 4.3e-114 416.0 382 56.5
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 6.2e-113 412.1 376 55.6
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 3.4e-111 406.4 411 51.8
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 2.1e-97 360.5 361 49.9
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.1e-96 358.2 236 71.6
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 6.4e-94 349.0 278 63.7
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 5.4e-93 345.9 506 41.7
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 7.6e-79 298.9 511 35.4
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 5.8e-71 272.7 239 58.2
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 4.3e-66 256.5 158 77.2
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 7.9e-60 235.7 575 30.1
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 3.0e-59 233.8 131 83.2
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 1.1e-58 231.9 417 37.2
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 1.0e-54 218.8 258 47.7
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 9.1e-48 195.7 339 35.1
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.7e-46 191.4 148 59.5
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.0e-42 177.9 95 87.4
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 2.8e-41 174.1 126 59.5
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 1.1e-40 172.2 94 84.0
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 8.5e-38 162.5 139 59.7
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 2.8e-33 147.5 95 72.6
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 4.0e-27 127.1 138 50.7
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 7.7e-23 112.8 100 61.0
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 4.5e-15 87.0 60 66.7
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.3e-11 74.7 42 81.0
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 3.0e-11 74.3 42 76.2
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.0e-06 59.3 104 35.6


User provided reference genes

Program Settings