Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 6.9e-119 430.6 214 100.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 2.4e-116 422.2 214 97.7
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.1e-107 392.5 235 83.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.9e-97 359.4 206 83.5
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 8.2e-96 354.0 209 79.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.1e-95 353.6 209 81.3
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.4e-95 353.2 214 79.4
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 2.4e-95 352.4 214 78.5
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.1e-95 351.7 206 81.6
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.3e-95 351.3 206 81.6
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.9e-95 350.9 212 77.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.5e-94 349.7 211 78.7
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.5e-94 349.7 207 80.7
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.6e-94 349.0 214 77.1
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.4e-94 348.6 212 78.3
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 4.5e-94 348.2 214 77.6
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 5.9e-94 347.8 206 80.1
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 5.9e-94 347.8 209 78.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 7.6e-94 347.4 211 76.8
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.0e-93 347.1 206 80.1
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.0e-93 347.1 212 78.3
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.3e-93 346.7 212 77.8
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.3e-93 346.7 206 81.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.7e-93 346.3 212 75.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.5e-93 344.4 212 77.4
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 8.4e-93 344.0 205 78.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.9e-92 342.8 206 79.6
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 2.5e-92 342.4 214 76.2
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.5e-92 342.4 209 77.5
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 4.2e-92 341.7 214 75.7
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 4.2e-92 341.7 211 76.3
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 4.2e-92 341.7 207 77.8
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 4.2e-92 341.7 209 77.0
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 7.2e-92 340.9 211 75.8
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 7.2e-92 340.9 214 75.7
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 9.3e-92 340.5 214 77.1
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 9.3e-92 340.5 209 77.0
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.6e-91 339.7 209 76.6
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 2.7e-91 339.0 210 76.7
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 6.1e-91 337.8 209 75.6
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.9e-91 337.4 178 92.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.9e-91 337.4 206 77.2
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 7.9e-91 337.4 214 75.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.0e-90 337.0 205 78.5
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.8e-90 336.3 209 74.6
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.8e-90 336.3 214 74.3
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 2.3e-90 335.9 210 77.6
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.0e-90 335.5 205 76.6
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 3.0e-90 335.5 210 76.2
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.9e-90 335.1 210 75.7
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 5.1e-90 334.7 205 77.1
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 8.7e-90 334.0 211 74.4
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 8.7e-90 334.0 208 76.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 8.7e-90 334.0 214 73.8
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.1e-89 333.6 206 76.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.5e-89 333.2 208 76.4
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.5e-89 333.2 214 73.8
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.9e-89 332.8 208 76.4
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.9e-89 332.8 211 73.5
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 76.4
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.5e-89 332.4 205 76.6
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 76.0
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 76.0
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 3.3e-89 332.0 206 74.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.3e-89 331.6 208 75.5
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 5.7e-89 331.3 205 77.1
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 5.7e-89 331.3 208 75.5
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 5.7e-89 331.3 208 75.5
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 5.7e-89 331.3 214 74.8
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 7.4e-89 330.9 208 76.0
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 7.4e-89 330.9 203 77.8
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.3e-88 330.1 209 74.2
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.3e-88 330.1 208 75.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.6e-88 329.7 209 74.2
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.2e-88 329.3 212 75.5
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.8e-88 328.9 209 77.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 4.8e-88 328.2 210 73.3
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 4.8e-88 328.2 206 76.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 6.3e-88 327.8 206 76.2
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 6.3e-88 327.8 206 75.7
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 8.2e-88 327.4 205 74.6
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-87 327.0 208 74.5
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.2e-86 323.6 214 74.3
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.0e-86 322.8 215 71.6
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 5.0e-85 318.2 210 71.4
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 3.2e-84 315.5 207 74.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 3.6e-83 312.0 210 71.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.6e-83 312.0 211 71.6
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 6.1e-83 311.2 203 71.9
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.0e-82 310.5 186 79.0
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 2.0e-81 306.2 206 72.3
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.3e-81 305.4 203 69.5
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 3.3e-81 305.4 213 67.6
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 7.4e-81 304.3 213 70.4
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.2e-80 302.8 207 70.0
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.4e-79 300.1 214 69.6
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.1e-79 298.9 209 71.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.6e-75 285.4 203 68.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.8e-74 283.1 206 68.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.3e-74 282.7 203 68.0
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 3.9e-74 282.0 178 77.5
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.7e-72 275.4 166 77.1
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 4.8e-72 275.0 190 72.1
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 4.1e-71 271.9 142 90.8
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.3e-71 271.6 167 77.2
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 5.2e-66 255.0 250 54.0
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 6.3e-64 248.1 157 75.2
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.0e-61 240.7 157 73.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 3.8e-61 238.8 198 60.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.6e-59 233.4 159 71.1
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.5e-57 226.9 211 53.6
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.7e-54 216.1 182 57.1
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.1e-52 210.7 208 51.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 2.4e-47 193.0 157 59.9
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 7.7e-46 188.0 211 48.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.7e-45 186.8 129 69.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.7e-45 186.8 129 69.0
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 6.6e-45 184.9 141 64.5
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.0e-37 158.7 223 39.5
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.0e-37 158.7 223 39.5
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 6.2e-35 151.8 95 78.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.2e-27 127.5 194 38.7
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 6.0e-22 108.6 89 60.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 4.7e-19 99.0 100 55.0
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.2e-17 94.4 72 58.3
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.9e-17 91.3 59 78.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.9e-17 91.3 58 79.3
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 3.2e-15 86.3 53 77.4
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 4.6e-14 82.4 56 69.6
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 6.0e-14 82.0 77 54.5
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 3.3e-12 76.3 44 77.3
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.4e-09 66.2 47 70.2
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 3.4e-09 66.2 50 60.0
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.7e-08 63.9 134 37.3
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 1.1e-07 61.2 36 61.1
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.2e-07 59.7 39 69.2
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 2.1e-06 57.0 53 54.7
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.7e-06 56.6 33 78.8


User provided reference genes

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