Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 3.7e-43 177.9 100 100.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.2e-38 162.9 93 97.8
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 4.2e-34 147.9 93 91.4
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 9.3e-26 120.2 96 77.1
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 4.6e-25 117.9 93 76.3
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.5e-17 91.7 93 63.4
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 4.6e-17 91.3 93 63.4
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 6.7e-16 87.4 93 59.1
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 2.5e-15 85.5 93 58.1
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 5.6e-15 84.3 95 60.0
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.3e-14 83.2 93 62.4
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 3.7e-14 81.6 93 58.1
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 4.8e-14 81.3 93 58.1
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 6.2e-14 80.9 95 55.8
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.4e-13 79.7 92 55.4
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.4e-13 79.7 87 59.8
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.8e-13 79.3 95 55.8
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 2.4e-13 79.0 92 57.6
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 4.0e-13 78.2 97 58.8
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.3e-13 77.8 92 54.3
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 5.3e-13 77.8 90 58.9
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.9e-13 77.4 93 53.8
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 6.9e-13 77.4 91 54.9
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 9.0e-13 77.0 97 55.7
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 9.0e-13 77.0 93 54.8
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.2e-12 76.6 93 54.8
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.2e-12 76.6 94 52.1
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.0e-12 75.9 94 57.4
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 4.5e-12 74.7 93 50.5
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 4.5e-12 74.7 96 56.2
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 4.5e-12 74.7 94 60.6
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 4.5e-12 74.7 93 55.9
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 5.8e-12 74.3 94 56.4
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.0e-11 73.6 92 54.3
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.3e-11 73.2 97 54.6
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.7e-11 72.8 94 52.1
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.2e-11 72.4 93 53.8
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 2.9e-11 72.0 93 57.0
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.9e-11 72.0 93 53.8
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 6.5e-11 70.9 93 49.5
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 8.4e-11 70.5 92 51.1
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 8.4e-11 70.5 93 55.9
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 8.4e-11 70.5 94 55.3
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 1.1e-10 70.1 93 50.5
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.1e-10 70.1 93 49.5
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.4e-10 69.7 94 52.1
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.9e-10 69.3 95 54.7
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.9e-10 69.3 89 51.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.9e-10 69.3 92 47.8
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.5e-10 68.9 93 54.8
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.5e-10 68.9 93 55.9
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.5e-10 68.9 93 50.5
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.5e-10 68.9 92 51.1
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 5.5e-10 67.8 93 54.8
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 5.5e-10 67.8 94 53.2
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 7.1e-10 67.4 94 51.1
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 7.1e-10 67.4 90 51.1
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 7.1e-10 67.4 96 53.1
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 9.3e-10 67.0 89 51.7
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 9.3e-10 67.0 94 48.9
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 1.2e-09 66.6 92 52.2
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.6e-09 66.2 92 53.3
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 2.1e-09 65.9 94 52.1
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 2.1e-09 65.9 93 48.4
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 2.1e-09 65.9 94 52.1
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 2.1e-09 65.9 93 48.4
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 2.1e-09 65.9 59 61.0
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.1e-09 65.9 95 53.7
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.1e-09 65.9 95 50.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 2.7e-09 65.5 93 50.5
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 2.7e-09 65.5 84 48.8
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.7e-09 65.5 93 49.5
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.5e-09 65.1 93 48.4
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.5e-09 65.1 93 52.7
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.6e-09 64.7 99 52.5
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.6e-09 64.7 99 52.5
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 6.0e-09 64.3 94 51.1
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 6.0e-09 64.3 94 51.1
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.0e-09 64.3 93 49.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 6.0e-09 64.3 94 47.9
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.8e-08 62.8 96 51.0
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.8e-08 62.8 96 50.0
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 2.3e-08 62.4 90 53.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 2.3e-08 62.4 93 48.4
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 5.1e-08 61.2 85 55.3
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.1e-07 60.1 52 63.5
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.1e-07 60.1 95 50.5
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.9e-07 59.3 95 48.4
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.5e-07 58.9 76 51.3
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.5e-07 58.9 94 53.2
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.7e-07 57.8 96 49.0
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 7.4e-07 57.4 94 50.0
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.6e-06 56.2 92 41.3
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 2.8e-06 55.5 57 50.9
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 3.7e-06 55.1 84 46.4
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 3.7e-06 55.1 101 43.6
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 8.2e-06 53.9 92 40.2


User provided reference genes

Program Settings