Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.7e-255 884.8 441 100.0
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 4.2e-240 834.3 443 95.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.6e-231 804.7 447 90.4
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.7e-201 706.1 438 80.8
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 3.5e-178 628.6 395 77.2
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.9e-176 622.9 412 73.3
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 9.6e-176 620.5 415 72.8
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.7e-175 618.6 392 76.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.1e-174 615.5 401 74.8
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 6.9e-174 614.4 401 74.6
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.0e-174 614.0 401 74.3
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 5.8e-173 611.3 426 71.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.6e-173 610.9 401 74.3
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.3e-172 610.1 426 71.1
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 3.8e-172 608.6 416 71.9
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 6.5e-172 607.8 401 74.3
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 5.5e-171 604.7 406 73.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 5.5e-171 604.7 396 75.0
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 9.3e-171 604.0 388 76.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 3.5e-170 602.1 413 71.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.0e-170 601.3 392 73.5
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.3e-169 600.1 384 75.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.3e-169 600.1 390 73.8
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 3.9e-169 598.6 401 73.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.1e-169 598.2 400 72.8
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-168 597.0 432 70.4
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-167 593.2 383 74.2
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.2e-167 592.8 430 69.5
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.8e-167 592.4 388 74.2
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.7e-167 592.0 433 69.3
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.4e-166 590.1 411 72.3
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 1.4e-166 590.1 387 73.9
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.4e-166 589.3 399 71.2
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.3e-166 588.2 386 72.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 9.0e-166 587.4 391 71.9
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 4.5e-165 585.1 423 69.5
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 4.5e-165 585.1 428 68.9
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.7e-164 583.2 439 67.7
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.2e-164 582.8 414 70.8
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.5e-164 581.3 406 72.2
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 8.5e-164 580.9 420 68.1
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.4e-163 580.1 384 72.4
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.6e-162 576.6 450 64.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.1e-162 576.2 397 72.5
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.7e-162 575.9 421 69.8
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 4.6e-162 575.1 386 72.0
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 4.6e-162 575.1 419 69.9
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.0e-161 573.9 405 69.6
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.0e-161 573.9 390 73.6
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.0e-161 573.9 390 73.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.4e-161 573.5 431 67.1
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.8e-161 573.2 433 67.4
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-161 572.8 420 68.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 3.0e-161 572.4 407 69.3
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 5.1e-161 571.6 422 68.2
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 8.8e-161 570.9 425 67.3
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-160 570.5 434 67.1
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 3.3e-160 568.9 390 72.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 4.3e-160 568.5 415 68.9
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 5.7e-160 568.2 414 69.8
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 7.4e-160 567.8 415 69.6
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 9.7e-160 567.4 434 68.0
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.2e-159 566.2 403 70.5
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.8e-159 565.8 407 69.0
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.8e-159 565.8 443 66.6
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.8e-159 565.8 386 72.3
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 8.2e-159 564.3 421 68.6
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 8.2e-159 564.3 443 66.4
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.1e-158 563.9 415 68.2
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.4e-158 562.8 421 67.9
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.4e-158 562.8 401 69.1
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 5.3e-158 561.6 408 71.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 6.9e-158 561.2 390 72.6
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 6.9e-158 561.2 422 67.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 6.9e-158 561.2 420 68.6
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 6.9e-158 561.2 388 72.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.2e-157 560.5 392 71.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.0e-157 559.7 404 66.8
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 5.9e-157 558.1 467 62.5
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.9e-157 558.1 421 67.0
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.3e-156 557.0 425 67.5
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 6.5e-156 554.7 428 67.3
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 6.5e-156 554.7 428 67.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 6.5e-156 554.7 401 68.1
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 8.5e-156 554.3 427 66.3
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.5e-156 554.3 399 70.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-155 553.9 425 67.3
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.4e-155 553.5 399 69.9
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.9e-155 553.1 398 69.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 2.5e-155 552.7 391 69.8
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.5e-155 552.7 416 68.3
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 4.2e-155 552.0 400 67.8
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 9.4e-155 550.8 393 67.7
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 7.9e-154 547.7 416 65.4
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 5.1e-153 545.0 389 69.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 3.3e-152 542.3 392 67.3
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.3e-152 542.3 387 67.7
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.7e-151 540.0 421 66.0
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.8e-151 539.3 408 66.2
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.8e-150 536.6 395 67.6
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.0e-150 534.6 390 68.5
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.0e-149 533.1 413 64.6
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.3e-148 530.4 410 63.9
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 3.2e-147 525.8 386 67.6
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 4.2e-147 525.4 387 64.9
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 7.2e-147 524.6 422 62.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 7.2e-147 524.6 386 65.8
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-146 523.9 386 67.4
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.6e-146 523.5 390 65.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.7e-146 521.9 397 65.2
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 8.0e-146 521.2 389 66.6
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.0e-145 520.8 393 66.7
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.1e-144 517.3 397 65.5
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 9.7e-144 514.2 406 64.5
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.7e-143 513.5 383 66.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.8e-142 510.0 388 65.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 7.0e-142 508.1 406 63.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 5.9e-141 505.0 411 63.5
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.3e-140 503.8 415 62.2
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.1e-139 500.7 414 61.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.1e-139 500.7 384 63.5
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.6e-138 496.9 294 79.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.2e-136 490.7 329 70.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 3.7e-135 485.7 413 62.2
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.2e-133 480.7 420 60.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.7e-132 476.9 407 58.5
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 8.0e-130 468.0 312 71.8
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 8.6e-124 448.0 252 83.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.6e-122 443.7 392 58.9
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-110 404.4 250 76.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-110 404.1 246 76.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.7e-109 399.8 280 69.6
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.1e-101 373.6 282 66.3
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.3e-100 370.2 399 49.9
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 2.6e-96 356.7 281 62.6
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.7e-93 346.7 389 49.9
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.5e-91 340.1 274 58.0
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.4e-89 333.6 377 48.0
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.2e-88 331.3 247 65.2
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.1e-81 308.1 234 64.1
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 7.1e-78 295.4 178 79.8
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-74 284.6 197 73.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 5.3e-65 252.7 161 73.9
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.3e-59 233.0 296 43.2
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.2e-53 214.9 202 55.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 9.7e-51 205.3 177 57.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.4e-48 196.8 166 59.6
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 4.3e-43 179.9 232 41.4
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-42 177.6 162 56.8
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.8e-42 177.2 146 60.3
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.1e-37 161.0 94 80.9
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 6.7e-36 156.0 82 85.4
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 9.7e-35 152.1 248 39.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 7.0e-33 146.0 164 48.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.2e-31 141.0 255 34.1
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.1e-29 132.9 295 33.6
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.3e-26 125.2 320 31.6
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.4e-25 121.7 73 76.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-23 114.8 63 79.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.0e-23 113.2 63 77.8
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 5.0e-23 113.2 257 35.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.5e-23 112.5 63 77.8
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.6e-21 108.2 305 28.2
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.7e-19 99.8 146 42.5
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.3e-18 98.6 182 33.5
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 3.7e-18 97.1 224 34.8
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.3e-15 88.6 183 32.8
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.8e-12 78.2 94 44.7
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 4.0e-12 77.0 67 55.2
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-09 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.0e-07 62.4 119 35.3
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 1.5e-06 58.5 146 33.6
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 2.5e-06 57.8 195 29.7
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 4.3e-06 57.0 119 36.1
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 9.5e-06 55.8 182 28.6
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 9.5e-06 55.8 182 28.6
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 9.5e-06 55.8 182 28.6


User provided reference genes

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