Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.6e-36 155.6 79 100.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.3e-27 125.9 79 81.0
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 2.2e-22 108.6 70 72.9
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.1e-21 106.3 65 78.5
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.4e-21 105.1 73 68.5
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 7.1e-21 103.6 69 75.4
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 7.1e-21 103.6 73 68.5
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 7.1e-21 103.6 73 68.5
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.2e-20 102.8 69 75.4
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 2.1e-20 102.1 65 75.4
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.1e-20 102.1 73 68.5
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 3.5e-20 101.3 73 68.5
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 3.5e-20 101.3 73 68.5
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 3.5e-20 101.3 66 77.3
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 3.5e-20 101.3 67 73.1
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 6.0e-20 100.5 68 72.1
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 6.0e-20 100.5 65 72.3
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.0e-20 100.5 78 64.1
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 7.8e-20 100.1 65 72.3
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 7.8e-20 100.1 73 68.5
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.0e-19 99.8 66 72.7
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 1.7e-19 99.0 65 69.2
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 1.7e-19 99.0 65 69.2
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.3e-19 98.6 68 72.1
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 3.0e-19 98.2 77 62.3
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.0e-19 98.2 65 70.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.0e-19 98.2 65 70.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.0e-19 98.2 65 70.8
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.0e-19 98.2 65 72.3
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 3.0e-19 98.2 79 65.8
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 3.0e-19 98.2 70 67.1
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 3.9e-19 97.8 59 78.0
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 3.9e-19 97.8 82 65.9
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 3.9e-19 97.8 77 64.9
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 3.9e-19 97.8 65 69.2
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 5.1e-19 97.4 59 76.3
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.1e-19 97.4 65 70.8
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 5.1e-19 97.4 79 58.2
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 5.1e-19 97.4 59 76.3
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 6.6e-19 97.1 77 57.1
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 6.6e-19 97.1 77 57.1
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.6e-19 97.1 58 77.6
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.6e-19 97.1 77 66.2
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 6.6e-19 97.1 67 65.7
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 8.7e-19 96.7 65 69.2
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 8.7e-19 96.7 70 64.3
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 8.7e-19 96.7 59 76.3
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 1.1e-18 96.3 77 57.1
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.1e-18 96.3 77 62.3
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 1.1e-18 96.3 59 74.6
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 1.1e-18 96.3 78 62.8
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.1e-18 96.3 58 75.9
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.5e-18 95.9 77 62.3
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.5e-18 95.9 77 62.3
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 1.5e-18 95.9 74 58.1
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.5e-18 95.9 68 64.7
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 1.5e-18 95.9 59 76.3
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.9e-18 95.5 64 68.8
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.9e-18 95.5 73 65.8
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.9e-18 95.5 77 55.8
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.9e-18 95.5 77 55.8
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.9e-18 95.5 58 75.9
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 1.9e-18 95.5 79 64.6
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 2.5e-18 95.1 58 74.1
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.5e-18 95.1 77 59.7
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.5e-18 95.1 74 63.5
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 3.3e-18 94.7 77 57.1
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 4.3e-18 94.4 70 64.3
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.3e-18 94.4 77 57.1
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 4.3e-18 94.4 64 68.8
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.3e-18 94.4 58 72.4
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 5.6e-18 94.0 77 57.1
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 5.6e-18 94.0 64 68.8
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 5.6e-18 94.0 64 68.8
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 7.3e-18 93.6 77 57.1
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 7.3e-18 93.6 77 57.1
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 7.3e-18 93.6 64 68.8
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 7.3e-18 93.6 64 68.8
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 7.3e-18 93.6 64 68.8
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 9.6e-18 93.2 77 61.0
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 9.6e-18 93.2 70 65.7
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 9.6e-18 93.2 70 65.7
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 9.6e-18 93.2 66 66.7
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 9.6e-18 93.2 77 62.3
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-17 92.8 64 68.8
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-17 92.8 64 68.8
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.3e-17 92.8 68 64.7
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.6e-17 92.4 64 67.2
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.6e-17 92.4 68 67.6
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.1e-17 92.0 65 63.1
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.6e-17 91.3 64 65.6
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.8e-16 89.0 65 63.1
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.8e-16 89.0 65 60.0
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 2.4e-16 88.6 79 55.7
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 4.0e-16 87.8 65 58.5
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 5.3e-16 87.4 65 63.1
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.2e-15 86.3 58 65.5
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.3e-14 82.8 61 67.2
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 1.7e-14 82.4 50 76.0
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 3.8e-14 81.3 66 60.6
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 1.1e-13 79.7 51 72.5
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.2e-13 77.8 50 70.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 1.6e-12 75.9 60 58.3
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 5.1e-11 70.9 66 51.5
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 2.4e-08 62.0 59 49.2
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.5e-07 59.3 49 61.2


User provided reference genes

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