Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 1.0e-115 420.2 235 100.0
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 8.4e-110 400.6 239 93.3
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 6.6e-99 364.4 236 84.3
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 4.3e-98 361.7 208 91.8
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 2.8e-73 279.3 242 68.2
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 8.2e-73 277.7 241 68.0
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 3.1e-72 275.8 236 66.1
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 4.1e-72 275.4 235 69.4
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 2.0e-71 273.1 236 69.9
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 4.5e-71 271.9 235 70.6
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 7.6e-71 271.2 238 65.5
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 7.6e-71 271.2 236 67.4
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 2.2e-70 269.6 235 65.5
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 5.0e-70 268.5 237 67.5
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 1.4e-69 266.9 237 67.1
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 1.4e-69 266.9 238 67.6
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 2.5e-69 266.2 237 65.4
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 1.6e-68 263.5 234 63.2
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 2.7e-68 262.7 237 67.5
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 7.9e-68 261.2 242 68.2
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 1.0e-67 260.8 258 62.8
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 6.7e-67 258.1 236 64.4
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 1.1e-66 257.3 247 67.2
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 4.3e-66 255.4 239 62.8
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 7.4e-66 254.6 235 63.0
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 7.4e-66 254.6 235 64.3
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 9.7e-66 254.2 237 64.1
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 2.8e-65 252.7 235 62.6
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 1.1e-64 250.8 235 62.6
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 1.4e-64 250.4 239 62.8
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 1.4e-64 250.4 236 64.8
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 3.1e-64 249.2 235 64.3
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 4.1e-64 248.8 237 62.4
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 4.1e-64 248.8 242 66.9
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 9.0e-64 247.7 198 74.2
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 1.0e-62 244.2 239 64.0
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 1.3e-62 243.8 240 60.0
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 1.3e-62 243.8 218 64.7
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 1.7e-62 243.4 241 60.6
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 2.2e-62 243.0 236 64.8
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 2.2e-62 243.0 238 63.4
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 6.5e-62 241.5 238 60.1
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 8.5e-62 241.1 240 63.3
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 1.1e-61 240.7 238 65.1
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 1.9e-61 240.0 239 61.9
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 3.6e-60 235.7 190 67.4
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 6.1e-60 235.0 237 61.6
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 7.9e-60 234.6 191 66.0
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 7.9e-60 234.6 190 64.2
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 7.9e-60 234.6 190 64.2
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 1.0e-59 234.2 197 62.4
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 1.4e-59 233.8 240 59.2
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.4e-59 233.8 191 65.4
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 5.1e-59 231.9 203 67.5
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 8.8e-59 231.1 237 62.0
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 1.1e-58 230.7 238 58.4
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 5.7e-58 228.4 238 59.2
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 5.7e-58 228.4 187 66.8
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 7.4e-58 228.0 235 57.4
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 2.2e-57 226.5 238 58.8
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 1.1e-56 224.2 237 57.8
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 2.4e-56 223.0 237 57.4
AUR62013336 Chenopodium quinoa HOM05D006257 ORTHO05D007708 3.1e-56 222.6 259 54.1
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 1.5e-55 220.3 238 58.4
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 3.4e-55 219.2 239 55.6
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 3.4e-55 219.2 235 57.0
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 4.5e-55 218.8 197 66.0
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 4.5e-55 218.8 197 66.0
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 1.0e-54 217.6 235 56.2
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.3e-54 217.2 175 72.0
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.3e-54 217.2 197 65.5
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 1.3e-54 217.2 197 66.0
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 2.9e-54 216.1 239 59.4
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 2.9e-54 216.1 235 55.3
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 5.0e-54 215.3 235 56.2
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 6.5e-54 214.9 191 66.5
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 8.5e-54 214.5 173 68.2
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 1.1e-53 214.2 195 62.1
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 5.5e-53 211.8 241 56.4
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 7.2e-53 211.5 210 59.0
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 7.2e-53 211.5 188 64.4
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 1.6e-52 210.3 188 63.8
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 1.6e-52 210.3 191 61.8
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 2.7e-52 209.5 173 68.2
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 2.7e-52 209.5 173 68.2
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 3.6e-52 209.1 201 58.7
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 6.1e-52 208.4 171 69.0
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 2.3e-51 206.5 149 76.5
HPP92_024114 Vanilla planifolia HOM05D006257 ORTHO05D007708 3.0e-51 206.1 181 66.3
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 6.7e-51 204.9 191 62.8
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 1.5e-50 203.8 173 67.6
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 1.5e-50 203.8 173 67.6
HPP92_024119 Vanilla planifolia HOM05D006257 ORTHO05D007708 2.0e-50 203.4 181 65.7
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 2.6e-50 203.0 247 50.2
Os06g0705100 Oryza sativa ssp. japonica HOM05D006257 ORTHO05D007708 2.6e-50 203.0 195 60.0
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 3.3e-50 202.6 173 66.5
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 1.3e-49 200.7 172 62.8
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 1.1e-48 197.6 192 62.0
ATR0598G180 Amborella trichopoda HOM05D006257 ORTHO05D007708 1.4e-48 197.2 147 73.5
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 3.1e-48 196.1 151 72.8
CANSAT11G2152 Cannabis sativa HOM05D006257 ORTHO05D007708 7.0e-48 194.9 134 77.6
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 1.6e-47 193.7 259 50.2
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 2.6e-47 193.0 184 59.8
Zm00001eb227340 Zea mays HOM05D006257 ORTHO05D007708 5.9e-47 191.8 168 62.5
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 3.8e-46 189.1 179 62.0
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 3.8e-46 189.1 147 67.3
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 6.5e-46 188.3 204 57.4
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 2.7e-44 183.0 177 58.8
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 8.2e-41 171.4 177 59.3
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 1.4e-40 170.6 177 59.9
Aqoxy7G03671 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 5.9e-39 165.2 205 52.2
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 2.9e-38 162.9 179 55.3
BcaC03g16142 Brassica carinata HOM05D006257 ORTHO05D007708 1.6e-31 140.6 140 60.7
Mapoly0099s0035 Marchantia polymorpha HOM05D006257 ORTHO05D007708 1.6e-31 140.6 144 54.2
A02p24830 Brassica napus HOM05D006257 ORTHO05D007708 1.7e-30 137.1 128 60.9
SMO111G0154 Selaginella moellendorffii HOM05D006257 ORTHO05D007708 6.5e-30 135.2 175 46.3
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 1.1e-29 134.4 128 59.4
AagrBONN_evm.TU.Sc2ySwM_344.2604 Anthoceros agrestis HOM05D006257 ORTHO05D007708 1.4e-27 127.5 144 50.7
Pp3c8_15020 Physcomitrium patens HOM05D006257 ORTHO05D007708 4.4e-26 122.5 195 40.5
SEGI_32211 Sequoiadendron giganteum HOM05D006257 ORTHO05D007708 1.7e-22 110.5 104 56.7
Mapoly0522s0001 Marchantia polymorpha HOM05D006257 ORTHO05D007708 2.0e-18 97.1 106 50.0
C02p39320 Brassica napus HOM05D006257 ORTHO05D007708 1.7e-17 94.0 75 65.3
Pp3c24_6770 Physcomitrium patens HOM05D006257 ORTHO05D007708 2.2e-17 93.6 147 38.8
FAN19G1291 Fragaria x ananassa HOM05D006257 ORTHO05D007708 3.6e-12 76.3 88 53.4
BcaB05g23639 Brassica carinata HOM05D006257 ORTHO05D007708 4.0e-11 72.8 83 53.0


User provided reference genes

Program Settings