Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 9.5e-83 310.1 151 100.0
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.8e-74 282.0 138 100.0
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 6.9e-73 277.3 138 98.6
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.2e-72 276.6 138 97.8
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.4e-72 275.0 138 96.4
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.1e-70 270.0 138 94.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 1.1e-70 270.0 138 94.9
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 7.1e-70 267.3 138 94.2
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 7.1e-70 267.3 138 94.2
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.6e-69 266.2 138 91.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.1e-69 265.8 138 93.5
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 2.1e-69 265.8 135 94.1
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.7e-69 265.4 138 93.5
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 3.5e-69 265.0 135 94.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.5e-69 265.0 138 92.0
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.6e-69 264.6 138 92.8
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.6e-69 264.6 137 94.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.6e-69 264.6 137 94.2
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 6.0e-69 264.2 136 91.2
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 6.0e-69 264.2 138 93.5
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 6.0e-69 264.2 135 91.9
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 7.8e-69 263.8 138 92.8
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.8e-69 263.8 138 93.5
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 7.8e-69 263.8 137 92.7
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.3e-68 263.1 136 90.4
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 2.3e-68 262.3 138 92.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 3.0e-68 261.9 137 92.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 3.9e-68 261.5 138 93.5
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.9e-68 261.5 136 89.7
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 6.6e-68 260.8 136 89.7
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 6.6e-68 260.8 136 89.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 8.7e-68 260.4 136 90.4
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 8.7e-68 260.4 136 89.7
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.1e-67 260.0 137 92.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.1e-67 260.0 135 93.3
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.5e-67 259.6 138 90.6
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.5e-67 259.6 138 92.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.3e-67 258.5 138 89.9
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 4.3e-67 258.1 138 90.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 4.3e-67 258.1 138 90.6
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 4.3e-67 258.1 138 92.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.6e-67 257.7 138 90.6
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 7.3e-67 257.3 137 89.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.3e-67 257.3 137 89.8
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 7.3e-67 257.3 135 91.9
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 9.6e-67 256.9 138 91.3
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.3e-66 256.5 136 88.2
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.3e-66 256.5 136 88.2
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.3e-66 256.5 136 88.2
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.3e-66 256.5 136 88.2
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.3e-66 256.5 136 88.2
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.3e-66 256.5 137 89.8
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.6e-66 256.1 137 89.8
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.6e-66 256.1 135 91.9
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 2.1e-66 255.8 137 89.1
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 2.8e-66 255.4 136 91.2
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 3.6e-66 255.0 137 91.2
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 3.6e-66 255.0 137 89.8
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.8e-66 254.6 137 89.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 6.2e-66 254.2 138 90.6
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.1e-65 253.4 135 90.4
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.4e-65 253.1 138 89.1
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.8e-65 252.7 135 90.4
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.8e-65 252.7 136 89.0
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.8e-65 252.7 137 88.3
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.4e-65 252.3 138 88.4
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 6.9e-65 250.8 137 89.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 9.0e-65 250.4 136 88.2
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 9.0e-65 250.4 136 88.2
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 9.0e-65 250.4 136 88.2
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 9.0e-65 250.4 136 88.2
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.2e-64 250.0 139 87.8
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.5e-64 249.6 135 89.6
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.0e-64 249.2 138 87.0
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 3.4e-64 248.4 136 87.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.5e-64 248.1 137 86.9
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.8e-64 247.7 138 86.2
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 7.6e-64 247.3 133 88.0
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 7.6e-64 247.3 136 87.5
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 9.9e-64 246.9 135 88.1
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.3e-63 246.5 135 87.4
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.3e-63 246.5 135 89.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.7e-63 246.1 132 87.9
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.2e-63 245.7 135 87.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.9e-63 245.4 138 85.5
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 2.9e-63 245.4 138 85.5
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.8e-63 245.0 134 88.1
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.1e-62 243.4 135 86.7
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.1e-62 243.4 134 86.6
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.4e-62 242.3 138 84.8
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.4e-62 242.3 138 86.2
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.4e-62 242.3 133 88.0
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 4.2e-62 241.5 133 85.7
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.2e-61 240.0 133 86.5
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.6e-61 239.6 135 83.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.6e-61 239.6 135 83.7
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.1e-61 239.2 154 78.6
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.5e-61 238.4 135 83.0
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 4.6e-61 238.0 190 66.8
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 9.6e-59 230.3 145 80.7
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.1e-58 229.2 122 91.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.4e-57 225.7 120 92.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.0e-52 210.3 134 71.6
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.3e-52 209.9 135 71.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.1e-51 206.8 134 73.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 9.6e-51 203.8 117 84.6
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.1e-50 202.6 134 70.1
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.1e-50 200.7 114 86.8
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.4e-49 199.9 126 73.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 5.8e-48 194.5 112 87.5
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 5.1e-44 181.4 146 67.1
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 9.6e-43 177.2 94 90.4
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 6.3e-42 174.5 90 92.2
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 9.0e-41 170.6 93 89.2
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.5e-40 169.9 90 91.1
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 7.6e-40 167.5 90 88.9
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-39 166.8 90 90.0
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.3e-39 166.8 91 90.1
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.3e-39 166.8 97 86.6
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.7e-39 166.4 92 87.0
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.4e-38 163.3 111 75.7
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.5e-38 162.5 93 86.0
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.5e-38 162.5 93 86.0
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.2e-38 161.8 93 86.0
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 5.5e-38 161.4 93 86.0
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 7.2e-38 161.0 90 86.7
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-37 160.2 91 85.7
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.7e-36 154.5 92 82.6
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-35 152.5 104 73.1
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-35 152.5 90 84.4
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.5e-35 152.5 92 80.4
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.7e-35 150.6 90 83.3
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.7e-35 150.6 94 77.7
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 6.3e-34 147.9 93 76.3
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.0e-32 142.9 88 76.1
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 7.7e-32 141.0 90 76.7
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 4.2e-30 135.2 75 86.7
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 5.5e-30 134.8 91 71.4
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-28 129.4 77 83.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 8.8e-20 100.9 152 38.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.9e-14 83.2 52 78.8
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.2e-14 82.4 44 88.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 7.2e-14 81.3 43 90.7
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 8.2e-10 67.8 37 86.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.1e-06 57.4 73 45.2
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.5e-06 56.2 28 89.3


User provided reference genes

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