Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 8.8e-142 506.9 249 100.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.7e-127 458.0 242 92.6
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.3e-105 386.7 238 79.8
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 9.9e-85 317.4 182 86.3
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.4e-83 312.8 241 65.6
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 7.1e-83 311.2 241 64.7
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.2e-82 310.5 241 65.1
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.5e-82 308.9 241 64.3
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 4.6e-82 308.5 239 63.2
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 2.3e-81 306.2 240 65.0
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 5.1e-81 305.1 240 64.2
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 8.6e-81 304.3 241 64.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.1e-80 303.9 239 64.9
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.5e-80 303.5 241 62.2
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.5e-80 302.8 242 62.4
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.2e-79 300.4 240 63.8
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.1e-79 299.7 241 63.1
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.6e-79 298.9 247 62.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 4.7e-79 298.5 238 63.0
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.4e-78 297.0 241 62.7
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.0e-77 293.1 239 61.1
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-77 292.7 244 59.0
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-77 292.7 244 59.0
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.6e-77 292.7 240 61.2
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.4e-77 292.4 229 64.2
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 5.8e-77 291.6 251 60.6
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 9.9e-77 290.8 237 60.3
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.7e-76 290.0 240 59.2
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.7e-76 290.0 238 62.2
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.8e-76 288.9 238 60.9
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 6.4e-76 288.1 241 62.2
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.4e-75 287.0 227 63.4
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.2e-75 285.8 267 56.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 3.2e-75 285.8 240 60.4
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.1e-75 284.6 238 60.5
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 7.1e-75 284.6 240 60.0
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.2e-74 283.9 230 63.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.2e-74 283.9 243 58.4
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.6e-74 283.5 237 60.8
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 2.1e-74 283.1 229 61.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.1e-74 283.1 277 54.2
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.1e-74 283.1 277 54.2
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.3e-73 280.4 239 59.8
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.3e-73 280.4 239 59.8
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.7e-73 280.0 240 57.5
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 3.0e-73 279.3 239 60.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.0e-73 279.3 239 56.9
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 3.0e-73 279.3 239 58.2
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 3.9e-73 278.9 240 57.9
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.5e-72 276.9 238 60.1
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.9e-72 276.6 228 59.6
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 7.3e-72 274.6 242 57.9
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 9.6e-72 274.2 239 59.0
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 2.1e-71 273.1 247 56.3
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.8e-71 272.7 243 57.6
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.2e-70 268.5 264 54.5
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 6.9e-70 268.1 240 55.8
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.0e-69 266.5 227 60.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 5.8e-69 265.0 242 55.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 9.9e-69 264.2 242 58.3
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.9e-68 262.7 239 56.5
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.9e-68 261.9 241 56.8
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 6.4e-68 261.5 239 56.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 8.4e-68 261.2 226 61.5
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.1e-67 260.8 228 57.5
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.9e-67 260.0 240 58.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 5.4e-67 258.5 226 60.2
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 7.1e-67 258.1 240 54.2
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 7.1e-67 258.1 223 58.3
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 7.1e-67 258.1 223 58.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.2e-66 257.3 243 56.0
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 4.6e-66 255.4 240 57.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 4.6e-66 255.4 234 58.5
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.0e-65 254.2 240 54.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.3e-65 253.8 236 53.4
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.7e-65 253.4 239 56.1
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 8.7e-65 251.1 232 55.2
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.5e-64 250.4 228 59.2
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 5.6e-64 248.4 243 54.3
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 7.3e-64 248.1 240 54.6
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.6e-63 246.9 190 65.3
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.6e-63 246.9 241 54.4
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.6e-63 245.7 227 54.6
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 3.6e-63 245.7 251 52.2
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.1e-62 244.2 218 58.3
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.4e-62 243.8 253 53.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.8e-62 243.4 251 51.8
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.4e-62 243.0 215 59.1
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 6.9e-62 241.5 234 54.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 2.0e-61 240.0 236 50.8
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 2.6e-61 239.6 231 55.0
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 3.4e-61 239.2 233 54.1
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.9e-61 237.7 239 52.7
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 8.4e-60 234.6 204 59.3
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.1e-59 234.2 239 51.9
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.4e-59 233.0 213 54.9
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 3.3e-56 222.6 194 61.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.3e-56 222.6 182 62.6
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.5e-53 213.8 235 48.1
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.8e-53 211.8 228 50.0
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 7.9e-50 201.4 245 44.5
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.3e-49 199.9 240 43.3
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.1e-47 193.4 224 47.3
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 9.0e-46 188.0 143 64.3
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.0e-45 186.8 241 44.0
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 4.5e-45 185.7 112 75.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.4e-43 180.6 117 70.1
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 2.5e-43 179.9 112 73.2
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.3e-41 174.1 225 40.0
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.3e-41 173.3 230 41.3
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.9e-40 170.2 211 46.0
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.4e-38 164.1 225 45.3
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 5.9e-37 158.7 143 57.3
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.9e-32 143.7 179 44.7
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 9.1e-30 134.8 153 51.6
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.5e-27 126.7 254 35.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 3.6e-26 122.9 89 64.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 7.9e-26 121.7 178 43.3
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 9.1e-22 108.2 103 50.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.5e-21 107.5 81 59.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.6e-18 97.4 60 71.7
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 3.3e-16 89.7 54 75.9
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 6.3e-15 85.5 79 51.9
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.3e-12 77.8 90 43.3
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.6e-10 69.7 66 47.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 6.1e-10 68.9 66 53.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.0e-09 68.2 52 59.6
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 5.3e-06 55.8 43 55.8


User provided reference genes

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